Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060564.seq
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.10c |tif512||translation initiation factor|Schizosacchar...    96   5e-21
SPAC26H5.10c |tif51||translation initiation factor eIF5A|Schizos...    96   5e-21
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    32   0.089
SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   2.5  
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak...    27   3.3  
SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase |S...    26   4.4  
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    25   7.7  

>SPBC336.10c |tif512||translation initiation
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 157

 Score = 95.9 bits (228), Expect = 5e-21
 Identities = 42/57 (73%), Positives = 48/57 (84%)
 Frame = +2

Query: 89  MGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHVK 259
           M + E   FE G++GAS TFPMQCSALRKNG V++KGRPCKIV+MSTSKTGKHGH K
Sbjct: 1   MAEEEHVDFEGGEAGASLTFPMQCSALRKNGHVVIKGRPCKIVDMSTSKTGKHGHAK 57



 Score = 83.8 bits (198), Expect = 2e-17
 Identities = 37/57 (64%), Positives = 46/57 (80%)
 Frame = +1

Query: 256 KVHLVGXDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLRE 426
           KVH+V  DIFNG+KYED+ PSTHNMDVP VKR++YQL +I DDGYL LM  +G  ++
Sbjct: 57  KVHIVALDIFNGRKYEDMSPSTHNMDVPVVKRDEYQLVNI-DDGYLNLMTTDGTTKD 112


>SPAC26H5.10c |tif51||translation initiation factor
           eIF5A|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 157

 Score = 95.9 bits (228), Expect = 5e-21
 Identities = 42/57 (73%), Positives = 48/57 (84%)
 Frame = +2

Query: 89  MGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHVK 259
           M + E   FE G++GAS TFPMQCSALRKNG V++KGRPCKIV+MSTSKTGKHGH K
Sbjct: 1   MAEEEHVDFEGGEAGASLTFPMQCSALRKNGHVVIKGRPCKIVDMSTSKTGKHGHAK 57



 Score = 83.8 bits (198), Expect = 2e-17
 Identities = 37/57 (64%), Positives = 46/57 (80%)
 Frame = +1

Query: 256 KVHLVGXDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLRE 426
           KVH+V  DIFNG+KYED+ PSTHNMDVP VKR++YQL +I DDGYL LM  +G  ++
Sbjct: 57  KVHIVALDIFNGRKYEDMSPSTHNMDVPVVKRDEYQLVNI-DDGYLNLMTTDGTTKD 112


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 31.9 bits (69), Expect = 0.089
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = +1

Query: 229  IQNRKARPR-KVHLVGXDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYL 393
            ++N K RP+ ++ L G  I    K ++      NM +P+++ E  Q+ D + D YL
Sbjct: 940  MENGKRRPKYRIRLSGNPILGDGKSDN-----QNMSIPYIRGEYVQMIDANQDNYL 990


>SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
 Frame = +1

Query: 223 VHIQNRKARPRKVHLVGXDIFNGKKYEDICPSTHNMDVPHVKREDYQLT---DISDDGYL 393
           +H+ +    P+K  L   DI  G+   +  P   N  +   K + Y+L    DISD  Y 
Sbjct: 8   MHVHSESISPKKNDL---DIELGESVVE--PHLSNNSI--AKLDTYELEENEDISDYAY- 59

Query: 394 TLMADNGDLREGPQNFGW*XRAHSCVLTST 483
            L   + +    PQN+GW  +A+  +L+++
Sbjct: 60  KLAGISNEHPAHPQNWGWWKKAYIVLLSTS 89


>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 708

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -1

Query: 535 TNSSXQXXSRCTTIPCPLSKSVRNCVPEXTIRNFE 431
           TN        C+  PC   +++ N +PE T+ +FE
Sbjct: 428 TNIMVDLVRICSHNPCRFRRNLINLLPEITVAHFE 462


>SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -2

Query: 471 YATVCPXSPSEILRSLTQVTVVSHQGQVAII 379
           YA++CP +PS+ +  L +V  +  +    II
Sbjct: 306 YASICPMNPSQAVDDLLEVLGLKEKRDTVII 336


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +1

Query: 343 VKREDYQLTDISDDGYL 393
           +KREDY+LT  ++ GYL
Sbjct: 91  IKREDYELTLCANCGYL 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,521,977
Number of Sequences: 5004
Number of extensions: 49994
Number of successful extensions: 139
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)