Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060564.seq
(685 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0093 + 702223-702348,703434-703556,703646-703702,703797-70... 88 5e-18
03_06_0030 + 31161821-31161927,31163700-31163934,31164064-311648... 83 3e-16
07_03_1141 - 24264534-24264635,24265542-24265616,24265709-242657... 82 5e-16
12_02_0477 + 19503678-19503803,19504381-19504422,19504631-195046... 79 3e-15
04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585 33 0.28
07_01_0904 + 7609863-7610198,7610320-7610415,7610564-7610659 32 0.37
04_01_0576 + 7466032-7466802,7468382-7468444,7469043-7469122,746... 31 1.1
01_06_1303 - 36132588-36132710,36133879-36134103,36134318-361347... 29 2.6
03_02_0360 - 7796799-7796816,7797477-7797587,7797760-7798068 29 4.5
02_01_0461 - 3328662-3329087,3329124-3329201,3329370-3329597,333... 29 4.5
01_07_0321 + 42715969-42716233,42716320-42716399,42716545-427166... 28 6.0
>07_01_0093 +
702223-702348,703434-703556,703646-703702,703797-703871,
704105-704212
Length = 162
Score = 88.2 bits (209), Expect = 5e-18
Identities = 39/77 (50%), Positives = 55/77 (71%), Gaps = 1/77 (1%)
Frame = +2
Query: 89 MGDIEDTHFET-GDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHVKFT 265
M D E+ HFE+ D+GAS T+P Q +RKNG++++K RPCK+VE+STSKTGKHGH K
Sbjct: 1 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCH 60
Query: 266 WLGLISSMVKSMKISVP 316
++G+ K ++ VP
Sbjct: 61 FVGIDIFNGKKLEDIVP 77
Score = 85.4 bits (202), Expect = 4e-17
Identities = 35/57 (61%), Positives = 46/57 (80%)
Frame = +1
Query: 256 KVHLVGXDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLRE 426
K H VG DIFNGKK EDI PS+HN DVPHV R DYQL DIS+DG+++L+ ++G+ ++
Sbjct: 58 KCHFVGIDIFNGKKLEDIVPSSHNCDVPHVDRTDYQLIDISEDGFVSLLTESGNTKD 114
>03_06_0030 + 31161821-31161927,31163700-31163934,31164064-31164826,
31165816-31167650,31169294-31169424,31169993-31170075,
31170426-31170680,31171125-31171220,31171695-31171775,
31171811-31171968,31172434-31172534,31172614-31172629,
31173390-31173439,31174558-31174588,31175156-31175305,
31176135-31176173,31176288-31176410,31176496-31176552,
31176837-31176911,31177003-31177107
Length = 1496
Score = 82.6 bits (195), Expect = 3e-16
Identities = 34/57 (59%), Positives = 44/57 (77%)
Frame = +1
Query: 256 KVHLVGXDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLRE 426
K H V DIFNGKK EDI PS+HN DVPHV R DYQL DIS+DG+++L+ ++G ++
Sbjct: 1393 KCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTESGGTKD 1449
Score = 70.1 bits (164), Expect = 2e-12
Identities = 38/90 (42%), Positives = 53/90 (58%), Gaps = 14/90 (15%)
Frame = +2
Query: 89 MGDIEDTHFET-GDSGASATFPMQCSALRKNGFVMLKGRPC-------------KIVEMS 226
M D E+ HFE+ D+GAS T+P Q +RKNG +++K RPC K+VE+S
Sbjct: 1323 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKWSGNHASLLVDTKVVEVS 1382
Query: 227 TSKTGKHGHVKFTWLGLISSMVKSMKISVP 316
TSKTGKHGH K ++ + K ++ VP
Sbjct: 1383 TSKTGKHGHAKCHFVAIDIFNGKKLEDIVP 1412
>07_03_1141 -
24264534-24264635,24265542-24265616,24265709-24265765,
24265903-24266025,24266509-24266520,24267014-24267157,
24267606-24267626
Length = 177
Score = 81.8 bits (193), Expect = 5e-16
Identities = 33/57 (57%), Positives = 45/57 (78%)
Frame = +1
Query: 256 KVHLVGXDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLRE 426
K H V DIFNGKK EDI PS+HN DVPHV R +YQL DIS+DG+++L+ ++G+ ++
Sbjct: 75 KCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTEYQLIDISEDGFVSLLTESGNTKD 131
Score = 79.0 bits (186), Expect = 3e-15
Identities = 38/81 (46%), Positives = 54/81 (66%), Gaps = 5/81 (6%)
Frame = +2
Query: 89 MGDIEDTHFET-GDSGASATFPMQCSALRKNGFVMLKGRPC----KIVEMSTSKTGKHGH 253
M D E+ HFE+ D+GAS T+P Q +RKNG++++K RPC K+VE+STSKTGKHGH
Sbjct: 14 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKGFGKVVEVSTSKTGKHGH 73
Query: 254 VKFTWLGLISSMVKSMKISVP 316
K ++ + K ++ VP
Sbjct: 74 AKCHFVAIDIFNGKKLEDIVP 94
>12_02_0477 +
19503678-19503803,19504381-19504422,19504631-19504684,
19504946-19505068,19505154-19505210,19505299-19505373,
19505925-19506026
Length = 192
Score = 79.0 bits (186), Expect = 3e-15
Identities = 32/57 (56%), Positives = 43/57 (75%)
Frame = +1
Query: 256 KVHLVGXDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLRE 426
K H V DIF KK EDI PS+HN DVPHV R +YQL DIS+DG+++L+ +NG+ ++
Sbjct: 90 KCHFVAIDIFTAKKLEDIVPSSHNCDVPHVNRTEYQLIDISEDGFVSLLTENGNTKD 146
Score = 55.6 bits (128), Expect = 3e-08
Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Frame = +2
Query: 89 MGDIEDTHFET-GDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHV 256
M D E+ HFE+ D+GAS T+P Q +RKNG++++K RPCK + GHV
Sbjct: 1 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKDQILVRFTNFGQGHV 57
Score = 38.3 bits (85), Expect = 0.006
Identities = 17/36 (47%), Positives = 24/36 (66%)
Frame = +2
Query: 209 KIVEMSTSKTGKHGHVKFTWLGLISSMVKSMKISVP 316
K+VE+STSKTGKHGH K ++ + K ++ VP
Sbjct: 74 KVVEVSTSKTGKHGHAKCHFVAIDIFTAKKLEDIVP 109
>04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585
Length = 268
Score = 32.7 bits (71), Expect = 0.28
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = +3
Query: 129 PGPQPPSPCNVRPCVKTVSLC*RVVHARLLKCPHPKPE 242
P PQPP PC PC K C + C PKP+
Sbjct: 81 PLPQPPPPCKPPPCEKPPEDC-KPKPCHCCSCEKPKPK 117
>07_01_0904 + 7609863-7610198,7610320-7610415,7610564-7610659
Length = 175
Score = 32.3 bits (70), Expect = 0.37
Identities = 12/30 (40%), Positives = 24/30 (80%), Gaps = 1/30 (3%)
Frame = +1
Query: 340 HVKREDYQLTDISDDG-YLTLMADNGDLRE 426
H+ R +YQL DIS+DG +++L+ ++G+ ++
Sbjct: 46 HMNRTNYQLIDISEDGLFVSLLTESGNTKD 75
>04_01_0576 +
7466032-7466802,7468382-7468444,7469043-7469122,
7469505-7469622,7470035-7470067,7470400-7470474,
7470887-7471043,7471142-7471230,7472041-7472294,
7472977-7473148,7473250-7473333,7473626-7473730,
7474055-7474363,7474622-7474756,7476236-7476317,
7476423-7476502,7476622-7476783,7477071-7477138,
7478422-7478502,7478634-7478760,7478816-7478879,
7480808-7480854,7481042-7481335
Length = 1149
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 90 WVTSKTHTSRPETPGPQPPSPCNV 161
W+T T P+ P P PP PC+V
Sbjct: 52 WLTWPPPTPLPDAPPPPPPHPCDV 75
>01_06_1303 -
36132588-36132710,36133879-36134103,36134318-36134713,
36135352-36135547,36135591-36135740,36135818-36135924,
36135987-36136094,36136354-36136435,36136436-36136536,
36136778-36136996,36137455-36137583,36137665-36137742,
36137816-36137929,36138071-36138230,36139224-36139441
Length = 801
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = +2
Query: 74 IQNTTMGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMS 226
+Q ++ D E H T +ATFPM L N + +GR CK V +S
Sbjct: 431 VQPRSIIDREAMHRGTSIFLPTATFPMFPERLAMNAMSLQQGRGCKSVTVS 481
>03_02_0360 - 7796799-7796816,7797477-7797587,7797760-7798068
Length = 145
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Frame = +3
Query: 105 THTSRPETPGPQPPSPCNVRP-CVKTVSLC*RVVHARLLKCPHP 233
T PE P PP C + P C C ++ +LL+ HP
Sbjct: 3 TAKQAPENESPPPPPHCWIYPECTLVTRSCCLLLRLKLLRHGHP 46
>02_01_0461 -
3328662-3329087,3329124-3329201,3329370-3329597,
3330181-3330204
Length = 251
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = -1
Query: 433 EVPHAGHRCQPSGSGSHHPRYQSVGSLRAXRGVRPCC 323
EV H C P G S +P++ SV + G R C
Sbjct: 198 EVDHGRRHCSPRGRCSGNPKFDSVDACLMPIGCRSRC 234
>01_07_0321 +
42715969-42716233,42716320-42716399,42716545-42716613,
42716710-42716791,42716902-42716996,42717129-42717203,
42717385-42717436,42717442-42717630,42717667-42717752,
42717827-42717902,42718001-42718164,42718307-42718426
Length = 450
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +2
Query: 2 GTRFYCEALINSYLFDFIIPDRC*IQNTTMGD 97
GT FY +AL++ +LFD + D I+ T+ D
Sbjct: 132 GTNFYIQALVSPFLFDDMAQD---IEGLTLND 160
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,756,734
Number of Sequences: 37544
Number of extensions: 361148
Number of successful extensions: 1277
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1264
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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