Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060564.seq
         (685 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15)                97   1e-20
SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75)               31   1.1  
SB_53582| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_605| Best HMM Match : Calx-beta (HMM E-Value=0)                     29   3.5  
SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_41190| Best HMM Match : Extensin_2 (HMM E-Value=0.0029)             28   6.1  
SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42)                28   8.1  
SB_6893| Best HMM Match : PPV_E2_C (HMM E-Value=0.94)                  28   8.1  

>SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15)
          Length = 710

 Score = 97.1 bits (231), Expect = 1e-20
 Identities = 42/61 (68%), Positives = 50/61 (81%)
 Frame = +2

Query: 83  TTMGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHVKF 262
           T   ++ DT F +G+SGAS T+P QCS+LRKNG V++KGRPCKIVEMSTSKTGKHGH K 
Sbjct: 585 TMAEELADTEFHSGESGASDTYPAQCSSLRKNGHVVIKGRPCKIVEMSTSKTGKHGHAKV 644

Query: 263 T 265
           T
Sbjct: 645 T 645



 Score = 32.7 bits (71), Expect = 0.28
 Identities = 13/21 (61%), Positives = 17/21 (80%)
 Frame = +1

Query: 361 QLTDISDDGYLTLMADNGDLR 423
           ++T+I +DGYL LM DNGD R
Sbjct: 643 KVTNIEEDGYLELMDDNGDTR 663


>SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75)
          Length = 568

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +3

Query: 96  TSKTHTSRPETPGPQPPSPCNVRPCVKTVSLC*RVVH-ARLLKCPH 230
           T+K HT++P T  P    P N+ P + + +L   ++H     + PH
Sbjct: 168 TTKPHTTKPHTTKPHTTKPHNIDPTLPSPTLLNALLHFLYFYQAPH 213



 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 72  KFKTQQWVTSKTHTSRPETPGPQPPSPCNVRPC 170
           K KT +  T+K +T++P T  P+   P   +PC
Sbjct: 100 KPKTTKPHTNKPYTTKPRTTKPRTTKPHTTKPC 132


>SB_53582| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 393

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 19/52 (36%), Positives = 25/52 (48%)
 Frame = +3

Query: 84  QQWVTSKTHTSRPETPGPQPPSPCNVRPCVKTVSLC*RVVHARLLKCPHPKP 239
           +Q V S      P  P P PP+PC + PC +T     +VVH+  L    P P
Sbjct: 126 EQHVVSHVMHPAPPPPPPPPPAPC-MPPCHQT-----QVVHSVQLHASPPGP 171


>SB_605| Best HMM Match : Calx-beta (HMM E-Value=0)
          Length = 1958

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -1

Query: 118 LEVCVFDVTHCCVLNLTTVRNDKIKKITIY 29
           + + +F VT+CC L LT +   + +++TIY
Sbjct: 14  VNLIIFTVTNCCFLVLTALIGFRDRQVTIY 43


>SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1671

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/43 (37%), Positives = 18/43 (41%)
 Frame = +1

Query: 286 NGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNG 414
           NG  Y   CP   N D    + EDY  +   D  YLT   D G
Sbjct: 400 NGHTYHMTCPGQTNFDPAKKRCEDYDCSG-RDVAYLTDQNDGG 441


>SB_41190| Best HMM Match : Extensin_2 (HMM E-Value=0.0029)
          Length = 476

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -1

Query: 499 TIPCPLSKSVRNCVPEXTIRNFEVPH 422
           T+ CPL+ S  +C+P   + + ++PH
Sbjct: 105 TMACPLATSHTSCIPTIGVPSNDIPH 130


>SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42)
          Length = 382

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +3

Query: 99  SKTHTSRPETPGPQPPSPCNV 161
           ++T T++PET  P+PP+P  +
Sbjct: 165 TETTTTKPETKPPKPPAPSTI 185


>SB_6893| Best HMM Match : PPV_E2_C (HMM E-Value=0.94)
          Length = 1058

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +3

Query: 93  VTSKTHTSRPETPGPQPPSPCNVRP 167
           VT K  T +P TP P  P P   RP
Sbjct: 768 VTPKPVTPKPVTPKPVTPKPVTTRP 792


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,641,747
Number of Sequences: 59808
Number of extensions: 429909
Number of successful extensions: 1144
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1136
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)