Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060564.seq
         (685 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49967-1|CAA90247.1|  161|Caenorhabditis elegans Hypothetical pr...   100   8e-22
Z27079-13|CAA81597.2|  195|Caenorhabditis elegans Hypothetical p...    90   1e-18
AY204179-1|AAO39183.1|  486|Caenorhabditis elegans nuclear recep...    29   2.3  
AF332209-1|AAK17980.1|  350|Caenorhabditis elegans nuclear recep...    29   2.3  
AF078783-3|AAN63404.1|  504|Caenorhabditis elegans Nuclear hormo...    29   2.3  
AF078783-2|AAK82901.1|  486|Caenorhabditis elegans Nuclear hormo...    29   2.3  
AF003386-14|AAK82896.1|  811|Caenorhabditis elegans Hypothetical...    29   2.3  
AC024770-8|AAF59486.1|  740|Caenorhabditis elegans Hypothetical ...    29   4.1  
U40958-5|AAA81764.1|  654|Caenorhabditis elegans Hypothetical pr...    28   7.1  
U40946-2|AAO91682.1|  780|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>Z49967-1|CAA90247.1|  161|Caenorhabditis elegans Hypothetical
           protein F54C9.1 protein.
          Length = 161

 Score =  100 bits (240), Expect = 8e-22
 Identities = 44/53 (83%), Positives = 47/53 (88%)
 Frame = +2

Query: 101 EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHVK 259
           +D HF TGDSGA+ATFP QCSALRKN  VM+KGRPCKIVEMSTSKTGKHGH K
Sbjct: 7   DDEHFHTGDSGAAATFPKQCSALRKNEHVMIKGRPCKIVEMSTSKTGKHGHAK 59



 Score = 72.1 bits (169), Expect = 3e-13
 Identities = 34/49 (69%), Positives = 37/49 (75%)
 Frame = +1

Query: 256 KVHLVGXDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLM 402
           KVH+V  DIF  KK EDICPSTHNMDVP VKR +Y L  I DDGY +LM
Sbjct: 59  KVHMVAIDIFTSKKLEDICPSTHNMDVPVVKRREYLLMAI-DDGYCSLM 106


>Z27079-13|CAA81597.2|  195|Caenorhabditis elegans Hypothetical
           protein T05G5.10 protein.
          Length = 195

 Score = 90.2 bits (214), Expect = 1e-18
 Identities = 50/124 (40%), Positives = 72/124 (58%), Gaps = 2/124 (1%)
 Frame = +2

Query: 101 EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHVKFTWLGLI 280
           ++  F++ +SGA+ATFP QCSALRKN  VM++GRPCKIVEMSTSKTGKHGH K   + + 
Sbjct: 41  DEEQFDSAESGAAATFPKQCSALRKNEHVMIRGRPCKIVEMSTSKTGKHGHAKVHMVAID 100

Query: 281 SSMVKSMKISVPPHTTWTYPTXSAKTTN*LISRMMAT*P*WLTTVTC--VRDLKISDGXL 454
               K ++   P  +T        K    ++  +       +   +C    DLK+ +G L
Sbjct: 101 IFTTKKLEDICP--STHNMDVPVVKRREYILMSIEDGFCSLMDPESCELKDDLKMPEGDL 158

Query: 455 GHTV 466
           G+T+
Sbjct: 159 GNTI 162



 Score = 68.5 bits (160), Expect = 4e-12
 Identities = 32/49 (65%), Positives = 37/49 (75%)
 Frame = +1

Query: 256 KVHLVGXDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLM 402
           KVH+V  DIF  KK EDICPSTHNMDVP VKR +Y L  I +DG+ +LM
Sbjct: 93  KVHMVAIDIFTTKKLEDICPSTHNMDVPVVKRREYILMSI-EDGFCSLM 140


>AY204179-1|AAO39183.1|  486|Caenorhabditis elegans nuclear receptor
           NHR-80 protein.
          Length = 486

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 99  SKTHTSRPETPGPQPPSPCNVRPCVKTV 182
           S + T+   TPGP P +PC+  P V T+
Sbjct: 165 SASTTTNYSTPGPSPMAPCSAGPDVLTL 192


>AF332209-1|AAK17980.1|  350|Caenorhabditis elegans nuclear receptor
           NHR-80 protein.
          Length = 350

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 99  SKTHTSRPETPGPQPPSPCNVRPCVKTV 182
           S + T+   TPGP P +PC+  P V T+
Sbjct: 29  SASTTTNYSTPGPSPMAPCSAGPDVLTL 56


>AF078783-3|AAN63404.1|  504|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 80, isoform b protein.
          Length = 504

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 99  SKTHTSRPETPGPQPPSPCNVRPCVKTV 182
           S + T+   TPGP P +PC+  P V T+
Sbjct: 183 SASTTTNYSTPGPSPMAPCSAGPDVLTL 210


>AF078783-2|AAK82901.1|  486|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 80, isoform a protein.
          Length = 486

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 99  SKTHTSRPETPGPQPPSPCNVRPCVKTV 182
           S + T+   TPGP P +PC+  P V T+
Sbjct: 165 SASTTTNYSTPGPSPMAPCSAGPDVLTL 192


>AF003386-14|AAK82896.1|  811|Caenorhabditis elegans Hypothetical
           protein F59E12.1 protein.
          Length = 811

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +3

Query: 96  TSKTHTSRPETPGPQPPSPCNVRP 167
           T K  T R E+P P PP P   RP
Sbjct: 358 TEKPETPRAESPDPLPPPPSKKRP 381


>AC024770-8|AAF59486.1|  740|Caenorhabditis elegans Hypothetical
           protein Y39H10A.2 protein.
          Length = 740

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 19/69 (27%), Positives = 32/69 (46%)
 Frame = -2

Query: 447 PSEILRSLTQVTVVSHQGQVAIIRDISQLVVFALXVGYVHVVCGGTDIFILFTIEDIXPN 268
           PS+ L  +  V  V+ +  V  +     L++ +L VG   ++ G +DIF  F + D    
Sbjct: 208 PSKALSPVCSVRNVNQRVPVISLGTWIVLLILSLIVGLC-ILSGFSDIFQKFQLNDKTRK 266

Query: 267 QVNFTWPCF 241
           +  F W  F
Sbjct: 267 EEGFGWKLF 275


>U40958-5|AAA81764.1|  654|Caenorhabditis elegans Hypothetical
           protein F09F9.4 protein.
          Length = 654

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -2

Query: 183 KPFLRRAEHCMGKVAEAPESPVSKCVSSMSP 91
           +P  +R+++C G + E  E  ++KC  +M P
Sbjct: 345 EPVPKRSKYCDGPLIETQECTLTKCPEAMMP 375


>U40946-2|AAO91682.1|  780|Caenorhabditis elegans Hypothetical
           protein W05H9.4 protein.
          Length = 780

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = +1

Query: 319 THNMDVPH---VKREDYQLTDISDDGYLTLMADNGDLREGPQNFG 444
           T++ D+P     +R+D      SD+ Y T + D  D  +G QN G
Sbjct: 663 TNHFDLPEPPLARRQDPNCNPYSDEEYDTELEDEDDEVDGDQNTG 707


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,382,651
Number of Sequences: 27780
Number of extensions: 304974
Number of successful extensions: 883
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 883
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)