Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060564.seq
         (685 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    25   0.67 
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    25   0.67 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   2.7  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   2.7  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   4.7  

>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 25.0 bits (52), Expect = 0.67
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -2

Query: 177 FLRRAEHCMGKVAEAPESPVSKCVSSMSPIVV 82
           +LRR   C   + EAP  PV + + S++P+V+
Sbjct: 47  YLRRQLKCA--LGEAPCDPVGRRLKSLAPLVL 76


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 25.0 bits (52), Expect = 0.67
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -2

Query: 177 FLRRAEHCMGKVAEAPESPVSKCVSSMSPIVV 82
           +LRR   C   + EAP  PV + + S++P+V+
Sbjct: 47  YLRRQLKCA--LGEAPCDPVGRRLKSLAPLVL 76


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +3

Query: 96  TSKTHTSRPETPGPQ 140
           T   H   PETPGPQ
Sbjct: 462 TPHHHPHPPETPGPQ 476


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +1

Query: 277 DIFNGKKYEDIC 312
           D+ N +KYED+C
Sbjct: 597 DLSNERKYEDVC 608


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -2

Query: 243 FPVLDVDISTILHGR 199
           FPVL V I+ +LHG+
Sbjct: 8   FPVLFVIINVLLHGQ 22


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,015
Number of Sequences: 438
Number of extensions: 3895
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)