Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060561.seq
         (686 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    24   1.0  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   4.1  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    22   5.4  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    22   5.4  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    21   7.2  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   7.2  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 413 GPDEEGNYFERPGKLSDY 466
           GP E G Y ++PG L+ Y
Sbjct: 890 GPGEAGEYTKQPGMLAYY 907



 Score = 21.0 bits (42), Expect = 9.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 413 GPDEEGNYFERPGKLS 460
           GP  EG Y + PG L+
Sbjct: 440 GPGREGFYTQNPGFLA 455


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 304 DLFVNFITPTDTSVVQG 254
           +L V+  TP DTS+V+G
Sbjct: 499 NLAVSVATPNDTSLVRG 515


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +1

Query: 598 MEPPAGVVLREGQNYNPY 651
           M PPA V      NYN +
Sbjct: 463 MTPPASVQTESSDNYNSF 480


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +1

Query: 598 MEPPAGVVLREGQNYNPY 651
           M PPA V      NYN +
Sbjct: 411 MTPPASVQTESSDNYNSF 428


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 548 EQIRDKSGG*APLLQHE 498
           + I D++GG APL  H+
Sbjct: 150 QDIIDRNGGRAPLTYHQ 166



 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
 Frame = +3

Query: 231 WNHSGWFSPWTTLVSVGVMK--FTNKSARHATLCSILPSEIW 350
           W +     PW   +   + +  + +  ARHA  C +   ++W
Sbjct: 343 WANGQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLW 384


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 208 SEPDACTDCSSAKSRAPTPPPT 143
           S+ D   + +S  S   TPPPT
Sbjct: 416 SQSDITNNVNSPASMNQTPPPT 437


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,840
Number of Sequences: 336
Number of extensions: 3855
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18010165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)