Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060561.seq
         (686 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0389 - 13409848-13409964,13410049-13410114,13410209-134103...   120   1e-27
10_08_0870 - 21178136-21178534                                         30   1.5  
09_02_0327 - 7284829-7284889,7284946-7286126                           30   1.5  
09_02_0121 + 4502628-4502696,4503727-4503829,4504205-4504328,450...    30   1.5  
01_03_0251 + 14247293-14249926                                         29   4.6  
12_02_0966 - 24906361-24906958,24907084-24907250,24907403-249076...    28   6.0  
06_01_0636 + 4627533-4628546                                           28   6.0  
03_06_0483 - 34226496-34226864,34227140-34227360,34227677-342279...    28   6.0  
05_05_0070 + 22148595-22148907,22148988-22149104,22149196-221493...    28   8.0  
04_04_0716 + 27513201-27513854                                         28   8.0  
04_03_0055 + 10299539-10299703,10300042-10300746,10301025-103011...    28   8.0  
04_01_0259 + 3422055-3422462,3499540-3499671                           28   8.0  

>05_03_0389 -
           13409848-13409964,13410049-13410114,13410209-13410325,
           13410822-13410893,13410979-13411258,13411528-13411730,
           13412230-13412316,13412705-13412758,13413042-13413221,
           13414402-13414576,13414628-13414918,13414923-13415344
          Length = 687

 Score =  120 bits (289), Expect = 1e-27
 Identities = 51/88 (57%), Positives = 67/88 (76%)
 Frame = +2

Query: 245 LVQPLDHASVRRGYEVYKQVCKACHSLQYIAFRNLVNVTHTEDEAKAEAAEVMIKDGPDE 424
           ++   DHAS+RRG++VY QVC +CHS+  I++R+LV V +TE+E KA AAE+ + DGP++
Sbjct: 463 ILSSYDHASIRRGHQVYTQVCASCHSMSLISYRDLVGVAYTEEETKAMAAEIEVVDGPND 522

Query: 425 EGNYFERPGKLSDYLPSPYPNENAARAA 508
           EG  F RPGKLSD  P PYPNE AAR A
Sbjct: 523 EGEMFTRPGKLSDRFPQPYPNEQAARFA 550



 Score = 93.1 bits (221), Expect = 2e-19
 Identities = 40/65 (61%), Positives = 48/65 (73%)
 Frame = +1

Query: 481 PQ*KCGSCCNNGAYPPDLSLICSGRKGGEDYIFALLTGYMEPPAGVVLREGQNYNPYXPG 660
           P  +     N GAYPPDLSLI   R  G++Y+FALLTGY +PPAGV +REG +YNPY PG
Sbjct: 542 PNEQAARFANGGAYPPDLSLITKARHNGQNYVFALLTGYRDPPAGVQIREGLHYNPYFPG 601

Query: 661 GAISM 675
           GAI+M
Sbjct: 602 GAIAM 606


>10_08_0870 - 21178136-21178534
          Length = 132

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = -2

Query: 196 ACTDCSSAKSRAPTPPPTTP 137
           AC DC S K  AP P P TP
Sbjct: 21  ACPDCPSPKPPAPRPKPPTP 40


>09_02_0327 - 7284829-7284889,7284946-7286126
          Length = 413

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -2

Query: 181 SSAKSRAPTPPPTTPKVDSHTFLFFV 104
           +S  SR P PPP  P +  H FLF +
Sbjct: 138 ASGDSRNPPPPPRRPAIVLHAFLFLL 163


>09_02_0121 +
           4502628-4502696,4503727-4503829,4504205-4504328,
           4505963-4506306,4506383-4506487,4507907-4508288,
           4509173-4509437,4509936-4510094,4511150-4511201,
           4511266-4511462,4512865-4513350,4513797-4514093
          Length = 860

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -3

Query: 204 SLMPAQTAQVQKVELQHLHLPLPKWTATLFCFLSILECWWT 82
           S+MP QT   Q+  LQ L+LP          FLS+    W+
Sbjct: 506 SVMPTQTGHAQEARLQQLNLPHAMEILIAVSFLSLFLVIWS 546


>01_03_0251 + 14247293-14249926
          Length = 877

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 496 GSCCNNGAYPPDLSLICSGRKGGEDYIFALLTGY 597
           G CCN  A P  L  +   R G + +  A+ TG+
Sbjct: 98  GVCCNEFALPVVLKCVPDARLGAQVHAMAMATGF 131


>12_02_0966 -
           24906361-24906958,24907084-24907250,24907403-24907650,
           24907824-24908001,24908196-24908372,24908459-24908563,
           24908633-24908770,24909757-24910836
          Length = 896

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +3

Query: 225 NPWNHSGWFSPWTTLVSVGVMKFTNKSARHATLCSIL 335
           +P     WFS +T LVS  ++  T+KS+R ++  S L
Sbjct: 787 SPLTSCDWFSDFTPLVSRNLINGTSKSSRGSSTGSTL 823


>06_01_0636 + 4627533-4628546
          Length = 337

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = -1

Query: 680 APIEMAPPGKYGL*FCPSRSTTPAGGSM*PVSSAKM*SSPPLRP-EQIRDKSGG 522
           AP  +A P         + S  PAGG+M P++SA     PPL   E++R    G
Sbjct: 21  APTSLAVPLPLPPAATTTTSAPPAGGAMHPLASAGAAPPPPLEELERVRRVGSG 74


>03_06_0483 -
           34226496-34226864,34227140-34227360,34227677-34227933,
           34228388-34228483,34228660-34228805,34229774-34229977
          Length = 430

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +2

Query: 350 VNVTHTEDEAKAEAAEVMIKDGPDEEGNYFERPGKLSDYLPSPYPNENAARAA 508
           ++V    + +K++  ++ I DG       F+        LPSPY  ENA RAA
Sbjct: 355 ISVIQAGEGSKSQPRQITIDDGSPVASMNFDEAE-----LPSPYSCENAIRAA 402


>05_05_0070 +
           22148595-22148907,22148988-22149104,22149196-22149350,
           22149987-22150061,22150179-22150469,22150942-22151292,
           22151390-22151794
          Length = 568

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -2

Query: 175 AKSRAPTPPPTTPKVDS 125
           AK + P PPP++P+VD+
Sbjct: 78  AKEKKPPPPPSSPRVDA 94


>04_04_0716 + 27513201-27513854
          Length = 217

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = -2

Query: 211 ASEPDACTDCSSAKSRAPTPPPTTPKVDSHTFLFFVHP*VLVD 83
           A  PD C+  S+A   +P PPP   + D  + LF + P +L+D
Sbjct: 142 AKSPDTCSVASAA---SPQPPPPDAEADPDSTLFDL-PDLLLD 180


>04_03_0055 +
           10299539-10299703,10300042-10300746,10301025-10301116,
           10302896-10303313
          Length = 459

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 311 PCRLVCKLHNPDGH*RGPGAEPATVIPR 228
           P RL+C LH P      P  +P+T +PR
Sbjct: 332 PLRLLCTLHGPRLSSPKPSHQPSTHLPR 359


>04_01_0259 + 3422055-3422462,3499540-3499671
          Length = 179

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +2

Query: 365 TEDEAKAEAAEVMIKDGPDEE-GNYFERPGKLSDYLPSPYPN 487
           TE+    + A +M +DG DE+ GN     GK    +P P P+
Sbjct: 64  TEEIQTPDRAAIMFRDGFDEDYGNTLNYFGKKKPLVPLPPPD 105


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,976,568
Number of Sequences: 37544
Number of extensions: 495503
Number of successful extensions: 1902
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1893
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)