Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060561.seq
(686 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23565| Best HMM Match : Cytochrom_C1 (HMM E-Value=3.8e-15) 122 4e-28
SB_8522| Best HMM Match : Cytochrom_C1 (HMM E-Value=1.2e-06) 50 1e-06
SB_59443| Best HMM Match : RVT_1 (HMM E-Value=3.8e-07) 30 1.5
SB_50798| Best HMM Match : CBS (HMM E-Value=2.8) 30 1.5
SB_49990| Best HMM Match : PAN (HMM E-Value=0.12) 30 1.5
SB_49727| Best HMM Match : RVT_1 (HMM E-Value=4.5e-07) 30 1.5
SB_46740| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_39727| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_35108| Best HMM Match : AT_hook (HMM E-Value=0.15) 30 1.5
SB_20587| Best HMM Match : rve (HMM E-Value=7.2e-15) 30 1.5
SB_17624| Best HMM Match : rve (HMM E-Value=2.2e-11) 30 1.5
SB_59576| Best HMM Match : rve (HMM E-Value=3.7e-14) 30 1.5
SB_55917| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_53291| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_24375| Best HMM Match : rve (HMM E-Value=7.2e-15) 30 1.5
SB_213| Best HMM Match : rve (HMM E-Value=2.2e-08) 30 1.5
SB_50560| Best HMM Match : rve (HMM E-Value=7.2e-15) 29 3.5
SB_23782| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_48339| Best HMM Match : BAG (HMM E-Value=5.9) 28 6.2
SB_39330| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_5356| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_4819| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_57858| Best HMM Match : RNA_pol_A_CTD (HMM E-Value=5.7) 28 8.1
>SB_23565| Best HMM Match : Cytochrom_C1 (HMM E-Value=3.8e-15)
Length = 134
Score = 122 bits (293), Expect = 4e-28
Identities = 55/98 (56%), Positives = 69/98 (70%)
Frame = +2
Query: 215 PTSQPLESQWLVQPLDHASVRRGYEVYKQVCKACHSLQYIAFRNLVNVTHTEDEAKAEAA 394
P P + +DH S+RRG++VY+QVC ACHS+ +AFR+LV V +TEDE KA AA
Sbjct: 34 PPKLPWSHNGVFNSIDHDSIRRGFQVYRQVCAACHSMNRLAFRHLVGVCYTEDEMKAIAA 93
Query: 395 EVMIKDGPDEEGNYFERPGKLSDYLPSPYPNENAARAA 508
E + DGP+++G F RPGKLSD LP PY NE AARAA
Sbjct: 94 EYDVVDGPNDQGEMFTRPGKLSDPLPEPYANEEAARAA 131
Score = 32.7 bits (71), Expect = 0.29
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 171 FALEQSVQASGSEAHPPHNPWNHSGWFS 254
+ L+ V A E HPP PW+H+G F+
Sbjct: 19 YLLQPDVHAEELELHPPKLPWSHNGVFN 46
>SB_8522| Best HMM Match : Cytochrom_C1 (HMM E-Value=1.2e-06)
Length = 127
Score = 50.4 bits (115), Expect = 1e-06
Identities = 21/36 (58%), Positives = 26/36 (72%)
Frame = +1
Query: 568 DYIFALLTGYMEPPAGVVLREGQNYNPYXPGGAISM 675
DY+F LLTGY +PPAGV +R+ +N Y PG AI M
Sbjct: 1 DYVFHLLTGYADPPAGVEIRDDLYFNAYFPGQAIGM 36
>SB_59443| Best HMM Match : RVT_1 (HMM E-Value=3.8e-07)
Length = 942
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/23 (60%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
Frame = -2
Query: 199 DACTDCS-SAKSRAPTPP-PTTP 137
D CTDC+ +A S+A TPP PT+P
Sbjct: 616 DGCTDCNRNAPSQAATPPLPTSP 638
>SB_50798| Best HMM Match : CBS (HMM E-Value=2.8)
Length = 234
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/23 (60%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
Frame = -2
Query: 199 DACTDCS-SAKSRAPTPP-PTTP 137
D CTDC+ +A S+A TPP PT+P
Sbjct: 173 DGCTDCNRNAPSQAATPPLPTSP 195
>SB_49990| Best HMM Match : PAN (HMM E-Value=0.12)
Length = 310
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
Frame = +2
Query: 341 RNLVNVTHTEDEAKAEAA----EVMIKDGPDEEGNYFERPGKLSD 463
+N++N ++ EA A+ + E++ K+GP +G Y+ PG S+
Sbjct: 39 KNMMNANESDIEADADFSLFNREILDKEGPGPDGEYYIDPGSGSN 83
>SB_49727| Best HMM Match : RVT_1 (HMM E-Value=4.5e-07)
Length = 1286
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/23 (60%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
Frame = -2
Query: 199 DACTDCS-SAKSRAPTPP-PTTP 137
D CTDC+ +A S+A TPP PT+P
Sbjct: 1157 DGCTDCNRNAPSQAATPPLPTSP 1179
>SB_46740| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 134
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/23 (60%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
Frame = -2
Query: 199 DACTDCS-SAKSRAPTPP-PTTP 137
D CTDC+ +A S+A TPP PT+P
Sbjct: 73 DGCTDCNRNAPSQAATPPLPTSP 95
>SB_39727| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 259
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/23 (60%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
Frame = -2
Query: 199 DACTDCS-SAKSRAPTPP-PTTP 137
D CTDC+ +A S+A TPP PT+P
Sbjct: 124 DGCTDCNRNAPSQAATPPLPTSP 146
>SB_35108| Best HMM Match : AT_hook (HMM E-Value=0.15)
Length = 1600
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/23 (60%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
Frame = -2
Query: 199 DACTDCS-SAKSRAPTPP-PTTP 137
D CTDC+ +A S+A TPP PT+P
Sbjct: 635 DGCTDCNRNAPSQAATPPLPTSP 657
>SB_20587| Best HMM Match : rve (HMM E-Value=7.2e-15)
Length = 1485
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/23 (60%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
Frame = -2
Query: 199 DACTDCS-SAKSRAPTPP-PTTP 137
D CTDC+ +A S+A TPP PT+P
Sbjct: 1249 DGCTDCNRNAPSQAATPPLPTSP 1271
>SB_17624| Best HMM Match : rve (HMM E-Value=2.2e-11)
Length = 1213
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/23 (60%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
Frame = -2
Query: 199 DACTDCS-SAKSRAPTPP-PTTP 137
D CTDC+ +A S+A TPP PT+P
Sbjct: 790 DGCTDCNRNAPSQAATPPLPTSP 812
>SB_59576| Best HMM Match : rve (HMM E-Value=3.7e-14)
Length = 707
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/23 (60%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
Frame = -2
Query: 199 DACTDCS-SAKSRAPTPP-PTTP 137
D CTDC+ +A S+A TPP PT+P
Sbjct: 450 DGCTDCNRNAPSQAATPPLPTSP 472
>SB_55917| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1412
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/23 (60%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
Frame = -2
Query: 199 DACTDCS-SAKSRAPTPP-PTTP 137
D CTDC+ +A S+A TPP PT+P
Sbjct: 846 DGCTDCNRNAPSQAATPPLPTSP 868
>SB_53291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 675
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/23 (60%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
Frame = -2
Query: 199 DACTDCS-SAKSRAPTPP-PTTP 137
D CTDC+ +A S+A TPP PT+P
Sbjct: 275 DGCTDCNRNAPSQAATPPLPTSP 297
>SB_24375| Best HMM Match : rve (HMM E-Value=7.2e-15)
Length = 638
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/23 (60%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
Frame = -2
Query: 199 DACTDCS-SAKSRAPTPP-PTTP 137
D CTDC+ +A S+A TPP PT+P
Sbjct: 453 DGCTDCNRNAPSQAATPPLPTSP 475
>SB_213| Best HMM Match : rve (HMM E-Value=2.2e-08)
Length = 745
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/23 (60%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
Frame = -2
Query: 199 DACTDCS-SAKSRAPTPP-PTTP 137
D CTDC+ +A S+A TPP PT+P
Sbjct: 232 DGCTDCNRNAPSQAATPPLPTSP 254
>SB_50560| Best HMM Match : rve (HMM E-Value=7.2e-15)
Length = 364
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/23 (60%), Positives = 17/23 (73%), Gaps = 2/23 (8%)
Frame = -2
Query: 199 DACTDCS-SAKSRAPTPP-PTTP 137
D CTDC+ +A S+A TPP PT P
Sbjct: 173 DGCTDCNRNAPSQAATPPLPTYP 195
>SB_23782| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 113
Score = 28.7 bits (61), Expect = 4.7
Identities = 10/37 (27%), Positives = 22/37 (59%)
Frame = -2
Query: 646 DCSSVPHVALHQQEVPCNQSVARRCNLRRPYVPSRSE 536
D + P + L + E+PCN +A+ N+++ + P ++
Sbjct: 26 DSNQQPRINLQENEIPCN--IAQPVNIKKSFEPDSNQ 60
>SB_48339| Best HMM Match : BAG (HMM E-Value=5.9)
Length = 404
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/44 (36%), Positives = 26/44 (59%)
Frame = -2
Query: 649 MDCSSVPHVALHQQEVPCNQSVARRCNLRRPYVPSRSETSPVGK 518
++C ++ + Q+E+ QSVARR N+ R +RS SP G+
Sbjct: 340 VECLKFCYMGVLQREL---QSVARRWNIHRIRPSTRSNISPPGR 380
>SB_39330| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 137
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/44 (36%), Positives = 26/44 (59%)
Frame = -2
Query: 649 MDCSSVPHVALHQQEVPCNQSVARRCNLRRPYVPSRSETSPVGK 518
++C ++ + Q+E+ QSVARR N+ R +RS SP G+
Sbjct: 16 VECLKFCYMGVLQREL---QSVARRWNIHRIRPSTRSNISPPGR 56
>SB_5356| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 233
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/44 (36%), Positives = 26/44 (59%)
Frame = -2
Query: 649 MDCSSVPHVALHQQEVPCNQSVARRCNLRRPYVPSRSETSPVGK 518
++C ++ + Q+E+ QSVARR N+ R +RS SP G+
Sbjct: 112 VECLKFCYMGVLQREL---QSVARRWNIHRIRPSTRSNISPPGR 152
>SB_4819| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 233
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/44 (36%), Positives = 26/44 (59%)
Frame = -2
Query: 649 MDCSSVPHVALHQQEVPCNQSVARRCNLRRPYVPSRSETSPVGK 518
++C ++ + Q+E+ QSVARR N+ R +RS SP G+
Sbjct: 112 VECLKFCYMGVLQREL---QSVARRWNIHRIRPSTRSNISPPGR 152
>SB_57858| Best HMM Match : RNA_pol_A_CTD (HMM E-Value=5.7)
Length = 280
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +2
Query: 275 RRGYEVYKQVCKACHSLQYIAFRNL--VNVTHTEDEAKAEAAEVMIKDGPDEEGNYFE 442
+R Y YK+ KAC +Y F+ L + + +DE A+ +K+ P + +Y +
Sbjct: 13 KRLYNNYKKSGKACDKEKYRKFQKLFKIKMKKAQDEYIADTLNSDLKEKPKKFWSYIK 70
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,152,349
Number of Sequences: 59808
Number of extensions: 520956
Number of successful extensions: 1674
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1671
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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