Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060561.seq
         (686 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75533-7|CAA99820.1|  285|Caenorhabditis elegans Hypothetical pr...   107   1e-23
Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z79598-5|CAB01863.1|  367|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z74032-5|CAA98467.1|  219|Caenorhabditis elegans Hypothetical pr...    28   5.4  
AC091267-1|AAK31565.1|  789|Caenorhabditis elegans Hypothetical ...    28   5.4  
AF000265-4|AAK68198.1|  457|Caenorhabditis elegans Hypothetical ...    28   7.2  
U00035-6|AAA50647.1|  315|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AM231686-1|CAJ77755.1|  315|Caenorhabditis elegans GDP-4-keto-6-...    27   9.5  

>Z75533-7|CAA99820.1|  285|Caenorhabditis elegans Hypothetical
           protein C54G4.8 protein.
          Length = 285

 Score =  107 bits (256), Expect = 1e-23
 Identities = 49/83 (59%), Positives = 65/83 (78%)
 Frame = +2

Query: 260 DHASVRRGYEVYKQVCKACHSLQYIAFRNLVNVTHTEDEAKAEAAEVMIKDGPDEEGNYF 439
           D ASVRRGYEVYKQVC ACHS++++ +R+ V+   TE+EAKAEAA+ +I D  D++G   
Sbjct: 59  DIASVRRGYEVYKQVCAACHSMKFLHYRHFVDTIMTEEEAKAEAADALIND-VDDKGASI 117

Query: 440 ERPGKLSDYLPSPYPNENAARAA 508
           +RPG L+D LP+PYPN+ AA AA
Sbjct: 118 QRPGMLTDKLPNPYPNKKAAAAA 140



 Score = 90.6 bits (215), Expect = 9e-19
 Identities = 39/65 (60%), Positives = 48/65 (73%)
 Frame = +1

Query: 481 PQ*KCGSCCNNGAYPPDLSLICSGRKGGEDYIFALLTGYMEPPAGVVLREGQNYNPYXPG 660
           P  K  +  NNGA PPDLSL+   R GG+DY+F+LLTGY+E PAGV + +G+ YNPY PG
Sbjct: 132 PNKKAAAAANNGAAPPDLSLMALARHGGDDYVFSLLTGYLEAPAGVKVDDGKAYNPYFPG 191

Query: 661 GAISM 675
           G ISM
Sbjct: 192 GIISM 196



 Score = 40.3 bits (90), Expect = 0.001
 Identities = 18/30 (60%), Positives = 20/30 (66%)
 Frame = +3

Query: 165 LLFALEQSVQASGSEAHPPHNPWNHSGWFS 254
           L++ALE SV ASG   HP   PW HSG FS
Sbjct: 27  LVYALENSVSASGDNVHPYALPWAHSGPFS 56


>Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical
           protein F28D9.1 protein.
          Length = 601

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -2

Query: 181 SSAKSRAPTPPPTTPKVDS 125
           SS++SR+P PPP  P+ DS
Sbjct: 508 SSSRSRSPPPPPRRPRQDS 526


>Z79598-5|CAB01863.1|  367|Caenorhabditis elegans Hypothetical
           protein C44H4.6 protein.
          Length = 367

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = +3

Query: 177 LEQSVQASGSEAHPPHNPWNHSGWFSPWTTLVSVGVMKFTNKSARHATL 323
           L   ++A G+ +      WN+     P+ T+  VG+ KF  +    +TL
Sbjct: 243 LALQIKAFGTPSKEDMAKWNYEYVHIPYDTITGVGIQKFIGRKLSLSTL 291


>Z74032-5|CAA98467.1|  219|Caenorhabditis elegans Hypothetical
           protein F35B12.6 protein.
          Length = 219

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 202 PDACTDCSSAKSRAPTPPPTTPKVDSH 122
           PD  +D S+ +S +P  PP  P+ D H
Sbjct: 84  PDTISDDSADQSGSPNSPPFVPQGDGH 110


>AC091267-1|AAK31565.1|  789|Caenorhabditis elegans Hypothetical
           protein Y37B11A.1 protein.
          Length = 789

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -2

Query: 619 LHQQEVPCNQSVARRCNLRRPYVPSRSETS 530
           ++    PCNQS+  +C  + P +P R + S
Sbjct: 675 MNDPNAPCNQSIPPKCPKKVPVLPVRQKRS 704


>AF000265-4|AAK68198.1|  457|Caenorhabditis elegans Hypothetical
           protein C18E3.6 protein.
          Length = 457

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -2

Query: 208 SEPDACTDCSSAKSRAPTPPPTTP 137
           S+P A   C+     APTPPP  P
Sbjct: 204 SDPGATPMCNRKSGGAPTPPPPPP 227


>U00035-6|AAA50647.1|  315|Caenorhabditis elegans Hypothetical
           protein R01H2.5 protein.
          Length = 315

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 16/82 (19%), Positives = 32/82 (39%), Gaps = 1/82 (1%)
 Frame = +2

Query: 275 RRGYEVYKQVCKACHSLQYIAFRNLVNVTHTEDEAKAEAAEVMIKDGPDEEGNY-FERPG 451
           R+   +   V   CH    I   + ++     D+      E M+  GP  + N+ +    
Sbjct: 82  RKNMAINDNVLALCHEFDVIKCVSCLSTCIFPDKTSYPIDETMVHLGPPHDSNFGYSYAK 141

Query: 452 KLSDYLPSPYPNENAARAATMV 517
           ++ D L   Y  E+  +  ++V
Sbjct: 142 RMIDVLNKGYAQEHGRKYTSVV 163


>AM231686-1|CAJ77755.1|  315|Caenorhabditis elegans
           GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4- reductase
           protein.
          Length = 315

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 16/82 (19%), Positives = 32/82 (39%), Gaps = 1/82 (1%)
 Frame = +2

Query: 275 RRGYEVYKQVCKACHSLQYIAFRNLVNVTHTEDEAKAEAAEVMIKDGPDEEGNY-FERPG 451
           R+   +   V   CH    I   + ++     D+      E M+  GP  + N+ +    
Sbjct: 82  RKNMAINDNVLALCHEFDVIKCVSCLSTCIFPDKTSYPIDETMVHLGPPHDSNFGYSYAK 141

Query: 452 KLSDYLPSPYPNENAARAATMV 517
           ++ D L   Y  E+  +  ++V
Sbjct: 142 RMIDVLNKGYAQEHGRKYTSVV 163


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,484,135
Number of Sequences: 27780
Number of extensions: 383846
Number of successful extensions: 1245
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1243
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)