Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060561.seq
(686 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g40810.1 68418.m04955 cytochrome c1, putative cytochrome c1, ... 122 2e-28
At3g27240.1 68416.m03405 cytochrome c1, putative cytochrome c1, ... 120 9e-28
At4g14400.3 68417.m02222 ankyrin repeat family protein contains ... 29 2.9
At4g14400.2 68417.m02221 ankyrin repeat family protein contains ... 29 2.9
At4g14400.1 68417.m02220 ankyrin repeat family protein contains ... 29 2.9
At3g01840.1 68416.m00125 protein kinase family protein contains ... 29 2.9
At2g32910.1 68415.m04035 expressed protein 29 3.8
At1g70640.1 68414.m08143 octicosapeptide/Phox/Bem1p (PB1) domain... 29 3.8
At1g18740.1 68414.m02337 expressed protein 29 3.8
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 28 5.0
At3g17330.1 68416.m02215 expressed protein contains Pfam profile... 28 5.0
At5g14870.1 68418.m01744 cyclic nucleotide-regulated ion channel... 28 6.7
At4g23090.1 68417.m03328 hypothetical protein 28 6.7
At4g22470.1 68417.m03245 protease inhibitor/seed storage/lipid t... 27 8.8
At4g14160.1 68417.m02184 transport protein, putative similar to ... 27 8.8
>At5g40810.1 68418.m04955 cytochrome c1, putative cytochrome c1,
heme protein, mitochondrial precursor (Clone PC13III)
[Solanum tuberosum] SWISS-PROT:P25076
Length = 307
Score = 122 bits (295), Expect = 2e-28
Identities = 53/94 (56%), Positives = 72/94 (76%)
Frame = +2
Query: 227 PLESQWLVQPLDHASVRRGYEVYKQVCKACHSLQYIAFRNLVNVTHTEDEAKAEAAEVMI 406
P + ++ DHAS+RRG++VY+QVC +CHS+ I++R+LV V +TE+EAKA AAE+ +
Sbjct: 77 PWPHEGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRDLVGVAYTEEEAKAMAAEIEV 136
Query: 407 KDGPDEEGNYFERPGKLSDYLPSPYPNENAARAA 508
DGP++EG F RPGKLSD LP PY NE+AAR A
Sbjct: 137 VDGPNDEGEMFTRPGKLSDRLPEPYSNESAARFA 170
Score = 91.9 bits (218), Expect = 4e-19
Identities = 37/56 (66%), Positives = 46/56 (82%)
Frame = +1
Query: 508 NNGAYPPDLSLICSGRKGGEDYIFALLTGYMEPPAGVVLREGQNYNPYXPGGAISM 675
N GAYPPDLSL+ R G++Y+FALLTGY +PPAG+ +REG +YNPY PGGAI+M
Sbjct: 171 NGGAYPPDLSLVTKARHNGQNYVFALLTGYRDPPAGISIREGLHYNPYFPGGAIAM 226
>At3g27240.1 68416.m03405 cytochrome c1, putative cytochrome c1,
heme protein, mitochondrial precursor (Clone PC13III)
[Solanum tuberosum] SWISS-PROT:P25076
Length = 307
Score = 120 bits (289), Expect = 9e-28
Identities = 52/94 (55%), Positives = 70/94 (74%)
Frame = +2
Query: 227 PLESQWLVQPLDHASVRRGYEVYKQVCKACHSLQYIAFRNLVNVTHTEDEAKAEAAEVMI 406
P ++ DHAS+RRG++VY+QVC +CHS+ I++R+LV V +TE+EAKA AAE+ +
Sbjct: 77 PWPHDGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRDLVGVAYTEEEAKAMAAEIEV 136
Query: 407 KDGPDEEGNYFERPGKLSDYLPSPYPNENAARAA 508
DGP++EG F RPGKLSD P PY NE+AAR A
Sbjct: 137 VDGPNDEGEMFTRPGKLSDRFPQPYANESAARFA 170
Score = 91.1 bits (216), Expect = 6e-19
Identities = 38/56 (67%), Positives = 45/56 (80%)
Frame = +1
Query: 508 NNGAYPPDLSLICSGRKGGEDYIFALLTGYMEPPAGVVLREGQNYNPYXPGGAISM 675
N GAYPPDLSLI R G +Y+FALLTGY +PPAG+ +REG +YNPY PGGAI+M
Sbjct: 171 NGGAYPPDLSLITKARHNGPNYVFALLTGYRDPPAGISIREGLHYNPYFPGGAIAM 226
>At4g14400.3 68417.m02222 ankyrin repeat family protein contains
ankyrin repeats, Pfam domain PF00023
Length = 604
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/56 (25%), Positives = 25/56 (44%)
Frame = +2
Query: 254 PLDHASVRRGYEVYKQVCKACHSLQYIAFRNLVNVTHTEDEAKAEAAEVMIKDGPD 421
P+ A+ YE+ K+ K C + +Y+ R N+ H + +A M+ D
Sbjct: 267 PIHSAAKNEHYEIIKEFIKRCPASKYLLNRLGQNILHVAAKNEASLTAYMLMHDKD 322
>At4g14400.2 68417.m02221 ankyrin repeat family protein contains
ankyrin repeats, Pfam domain PF00023
Length = 604
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/56 (25%), Positives = 25/56 (44%)
Frame = +2
Query: 254 PLDHASVRRGYEVYKQVCKACHSLQYIAFRNLVNVTHTEDEAKAEAAEVMIKDGPD 421
P+ A+ YE+ K+ K C + +Y+ R N+ H + +A M+ D
Sbjct: 267 PIHSAAKNEHYEIIKEFIKRCPASKYLLNRLGQNILHVAAKNEASLTAYMLMHDKD 322
>At4g14400.1 68417.m02220 ankyrin repeat family protein contains
ankyrin repeats, Pfam domain PF00023
Length = 670
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/56 (25%), Positives = 25/56 (44%)
Frame = +2
Query: 254 PLDHASVRRGYEVYKQVCKACHSLQYIAFRNLVNVTHTEDEAKAEAAEVMIKDGPD 421
P+ A+ YE+ K+ K C + +Y+ R N+ H + +A M+ D
Sbjct: 333 PIHSAAKNEHYEIIKEFIKRCPASKYLLNRLGQNILHVAAKNEASLTAYMLMHDKD 388
>At3g01840.1 68416.m00125 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 654
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +3
Query: 9 ATVGRICGARLLKKYG-LVWPQACQLSTNTQGWTKNR 116
+ + +CG L +G L W + Q+ T TQ W N+
Sbjct: 248 SAIAGVCGLVTLMVFGYLHWKKETQIQTQTQKWISNK 284
>At2g32910.1 68415.m04035 expressed protein
Length = 691
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = -2
Query: 640 SSVPHVALHQQEVPCNQSVARRCNLRRPYVPSRSETSPVGKH 515
+++P H Q++P + R+ + R Y P S P KH
Sbjct: 445 AAIPAQVTHTQQIPVPRDTDRKRSDRDRYAPGSSRGHPTRKH 486
>At1g70640.1 68414.m08143 octicosapeptide/Phox/Bem1p (PB1)
domain-containing protein contains Pfam profile PF00564:
PB1 domain
Length = 174
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/27 (48%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = -2
Query: 211 ASEPDACTDCSSAKSRAPTPP-PTTPK 134
+S P + T SS+KSR+ +PP P+TP+
Sbjct: 117 SSPPPSTTSSSSSKSRSRSPPSPSTPE 143
>At1g18740.1 68414.m02337 expressed protein
Length = 382
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -2
Query: 571 NLRRPYVPSRSETSPVGKHHCCSTSRIFIGVWRRQVVRKF 452
+LRR V S + S HH ST + + ++RQV KF
Sbjct: 16 SLRRDQVDSSTVVSGSSSHHEPSTMEVELDSFQRQVAEKF 55
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +2
Query: 371 DEAKAEAAEVMIKDGPDEEGNYFERPGKLSDYLPSPYPNENA 496
DE++ +A+E + +G + EG+ E G +S+ P P+E A
Sbjct: 111 DESEGDASEGDVSEGDESEGDVSE--GAVSERAEFPEPSEEA 150
>At3g17330.1 68416.m02215 expressed protein contains Pfam profile
PF04146: YT521-B-like family
Length = 595
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/60 (26%), Positives = 26/60 (43%)
Frame = -2
Query: 676 P*RWHLLXSMDCSSVPHVALHQQEVPCNQSVARRCNLRRPYVPSRSETSPVGKHHCCSTS 497
P +WH++ + S H+ LH E N+ V + + + E + KHH TS
Sbjct: 363 PVKWHIIKDVPNSYFRHIILHNNE---NKPVTNSRDTQEIILKQGLEVLKLFKHHAEKTS 419
>At5g14870.1 68418.m01744 cyclic nucleotide-regulated ion channel,
putative (CNGC18) similar to cyclic nucleotide and
calmodulin-regulated ion channel (cngc6) GI:4581207 from
[Arabidopsis thaliana]
Length = 706
Score = 27.9 bits (59), Expect = 6.7
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +2
Query: 86 HQHSRMDKKQKSVAVHFGSGRWRCWSSTF 172
HQ R+ K+ A + S +WR W + F
Sbjct: 563 HQFKRLQSKKLQHAFRYYSHQWRAWGACF 591
>At4g23090.1 68417.m03328 hypothetical protein
Length = 179
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/34 (38%), Positives = 15/34 (44%)
Frame = +3
Query: 240 SGWFSPWTTLVSVGVMKFTNKSARHATLCSILPS 341
SGWF P T V V V H +L + PS
Sbjct: 117 SGWFQPMLTDVGVAVHSSRPNGILHVSLSGVSPS 150
>At4g22470.1 68417.m03245 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
hydroxyproline-rich glycoprotein DZ-HRGP from Volvox
carteri f. nagariensis GP|6523547; contains Pfam profile
PF00234 Protease inhibitor/seed storage/LTP family
Length = 375
Score = 27.5 bits (58), Expect = 8.8
Identities = 17/38 (44%), Positives = 19/38 (50%)
Frame = -1
Query: 116 SVFCPSLSVGGQLTSLRPN*TIFFQKTCPTNPTDGGSC 3
+V C SVG + SL PN IFF K C G SC
Sbjct: 338 AVTCFCKSVGARRFSLSPNFGIFF-KVCGRRIPQGFSC 374
>At4g14160.1 68417.m02184 transport protein, putative similar to
Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
sapiens]
Length = 621
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -2
Query: 349 QISEGNILQRVACLADLFVNFITPTDTSVVQGLNQ 245
Q SEG L RV L +V+ T+ ++VQG +Q
Sbjct: 496 QNSEGKSLARVTTLTRQWVDTAVSTEVNLVQGFDQ 530
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,650,520
Number of Sequences: 28952
Number of extensions: 359349
Number of successful extensions: 1162
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1159
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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