Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060559.seq
         (676 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)          101   7e-22
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)             100   9e-22
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)                97   1e-20
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                 79   2e-15
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                    32   0.37 
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_30491| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.5  
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)                     29   4.5  
SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12)                  28   6.0  
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)               28   7.9  

>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score =  101 bits (241), Expect = 7e-22
 Identities = 47/116 (40%), Positives = 67/116 (57%)
 Frame = +3

Query: 258 GITIDIALWKFETSKYYXTIIXAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 437
           G T+++    F+T   + T++ APGH+ F+ NMI+G +QAD  VL+++A  GEFE G  +
Sbjct: 207 GNTVEVGRAAFDTDTKHFTLLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFER 266

Query: 438 NGQTREHALLAFXLGVKQLXRRSNKMDSTEPPYSEPXFEXXXXXXXXXXXXXGYNP 605
            GQTREHA+LA   GVK L    NKMD     ++E  +E             G+NP
Sbjct: 267 GGQTREHAMLAKTAGVKHLVILVNKMDDPTVKWNEERYEEIKVKLTPFLKKVGFNP 322



 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 18/40 (45%), Positives = 28/40 (70%)
 Frame = +1

Query: 136 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERD 255
           Y  G +DKRT+EK+E+EA+E  + ++  +W LD  + ERD
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERD 205


>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score =  100 bits (240), Expect = 9e-22
 Identities = 47/84 (55%), Positives = 59/84 (70%)
 Frame = +3

Query: 267 IDIALWKFETSKYYXTIIXAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 446
           +D+ L +F+T     T++ APGH+DFI NMITG +QAD A+L+V A TGEFEAG    GQ
Sbjct: 1   MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60

Query: 447 TREHALLAFXLGVKQLXRRSNKMD 518
           TREHA+L   LGV QL    NK+D
Sbjct: 61  TREHAILVRSLGVTQLIVAINKLD 84


>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
          Length = 106

 Score = 97.1 bits (231), Expect = 1e-20
 Identities = 44/49 (89%), Positives = 46/49 (93%)
 Frame = +1

Query: 52  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 198
           M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 1   MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49


>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score = 79.4 bits (187), Expect = 2e-15
 Identities = 35/39 (89%), Positives = 36/39 (92%)
 Frame = +3

Query: 258 GITIDIALWKFETSKYYXTIIXAPGHRDFIKNMITGTSQ 374
           GITIDIALWKFET KYY T+I APGHRDFIKNMITGTSQ
Sbjct: 22  GITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60



 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 19/20 (95%), Positives = 20/20 (100%)
 Frame = +1

Query: 196 MGKGSFKYAWVLDKLKAERD 255
           MGKGSFKYAWVLDKLKAER+
Sbjct: 1   MGKGSFKYAWVLDKLKAERE 20


>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = +1

Query: 52  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 147
           M K+    N+ VI HVD GKST T  L+ K G
Sbjct: 12  MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAG 43


>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/44 (36%), Positives = 26/44 (59%)
 Frame = +1

Query: 7   ELGYYTQFVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 138
           E+    + ++R  P   ++ T I + V+G+V+SGKST  G L Y
Sbjct: 92  EMRKVVEVLVRQVPD-DQQFTDIRMAVLGNVESGKSTLLGVLTY 134


>SB_30491| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1516

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +2

Query: 236 N*RLSVTRYHNRYCSLEVRN 295
           N +L ++RYH+RY SLEV N
Sbjct: 867 NPQLVMSRYHSRYVSLEVEN 886


>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = +3

Query: 312 TIIXAPGHRDFIKNMITGTSQADCAVLIVAAGTG 413
           T I  PGH  F      G +  D  VL+VAA  G
Sbjct: 79  TFIDTPGHAAFNSMRARGANVTDIVVLVVAADDG 112


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 76   NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK 174
            N  ++ HVD GKST    L+   G I K +  K
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK 1975


>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 359

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/52 (21%), Positives = 24/52 (46%)
 Frame = +3

Query: 258 GITIDIALWKFETSKYYXTIIXAPGHRDFIKNMITGTSQADCAVLIVAAGTG 413
           GI++  ++  F        I+  PGH+DF ++     +  D  ++++    G
Sbjct: 64  GISVATSVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115


>SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12)
          Length = 347

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = +1

Query: 7   ELGYYTQFVIRD*PKMGKEK-THINIVVIGHVDSGKSTTTGHLIY 138
           ELG   ++++R   +M +     + + V+G+VD+GKST  G L +
Sbjct: 209 ELGTVGEYLVR--VRMDENDFMEVRVAVVGNVDAGKSTLLGVLTH 251


>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
          Length = 240

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/49 (26%), Positives = 19/49 (38%)
 Frame = +3

Query: 258 GITIDIALWKFETSKYYXTIIXAPGHRDFIKNMITGTSQADCAVLIVAA 404
           GIT  I  +  +        +  PGH  F      G    D  +++VAA
Sbjct: 123 GITQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAA 171


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,197,908
Number of Sequences: 59808
Number of extensions: 360858
Number of successful extensions: 826
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)