Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060559.seq
(676 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 193 1e-49
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 193 1e-49
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 152 2e-37
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 144 4e-35
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 138 3e-33
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 107 5e-24
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 107 5e-24
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 105 2e-23
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 69 2e-12
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 69 2e-12
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 64 9e-11
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 64 9e-11
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 64 9e-11
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 34 0.081
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 33 0.19
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 33 0.19
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 33 0.25
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 33 0.25
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 32 0.32
Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical p... 31 0.75
Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical p... 31 0.75
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 31 0.75
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 31 0.75
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 29 4.0
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 29 4.0
AF040643-5|AAT81201.1| 299|Caenorhabditis elegans Hypothetical ... 28 5.3
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 193 bits (470), Expect = 1e-49
Identities = 95/126 (75%), Positives = 98/126 (77%)
Frame = +3
Query: 258 GITIDIALWKFETSKYYXTIIXAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 437
GITIDIALWKFET+KYY TII APGHRDFIKNMITGTSQADCAVL+VA GTGEFEAGISK
Sbjct: 70 GITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISK 129
Query: 438 NGQTREHALLAFXLGVKQLXRRSNKMDSTEPPYSEPXFEXXXXXXXXXXXXXGYNPAAVA 617
NGQTREHALLA LGVKQL NKMDSTEPP+SE F GYNP AV
Sbjct: 130 NGQTREHALLAQTLGVKQLIVACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVP 189
Query: 618 FVAISG 635
FV ISG
Sbjct: 190 FVPISG 195
Score = 144 bits (350), Expect = 4e-35
Identities = 66/68 (97%), Positives = 67/68 (98%)
Frame = +1
Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 231
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 232 DKLKAERD 255
DKLKAER+
Sbjct: 61 DKLKAERE 68
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 193 bits (470), Expect = 1e-49
Identities = 95/126 (75%), Positives = 98/126 (77%)
Frame = +3
Query: 258 GITIDIALWKFETSKYYXTIIXAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 437
GITIDIALWKFET+KYY TII APGHRDFIKNMITGTSQADCAVL+VA GTGEFEAGISK
Sbjct: 70 GITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISK 129
Query: 438 NGQTREHALLAFXLGVKQLXRRSNKMDSTEPPYSEPXFEXXXXXXXXXXXXXGYNPAAVA 617
NGQTREHALLA LGVKQL NKMDSTEPP+SE F GYNP AV
Sbjct: 130 NGQTREHALLAQTLGVKQLIVACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVP 189
Query: 618 FVAISG 635
FV ISG
Sbjct: 190 FVPISG 195
Score = 144 bits (350), Expect = 4e-35
Identities = 66/68 (97%), Positives = 67/68 (98%)
Frame = +1
Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 231
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 232 DKLKAERD 255
DKLKAER+
Sbjct: 61 DKLKAERE 68
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 152 bits (369), Expect = 2e-37
Identities = 72/79 (91%), Positives = 74/79 (93%)
Frame = +3
Query: 258 GITIDIALWKFETSKYYXTIIXAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 437
GITIDIALWKFET+KYY TII APGHRDFIKNMITGTSQADCAVL+VA GTGEFEAGISK
Sbjct: 70 GITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISK 129
Query: 438 NGQTREHALLAFXLGVKQL 494
NGQTREHALLA LGVKQL
Sbjct: 130 NGQTREHALLAQTLGVKQL 148
Score = 144 bits (350), Expect = 4e-35
Identities = 66/68 (97%), Positives = 67/68 (98%)
Frame = +1
Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 231
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 232 DKLKAERD 255
DKLKAER+
Sbjct: 61 DKLKAERE 68
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 144 bits (350), Expect = 4e-35
Identities = 66/68 (97%), Positives = 67/68 (98%)
Frame = +1
Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 231
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 232 DKLKAERD 255
DKLKAER+
Sbjct: 61 DKLKAERE 68
Score = 97.9 bits (233), Expect(2) = 7e-29
Identities = 44/48 (91%), Positives = 46/48 (95%)
Frame = +3
Query: 258 GITIDIALWKFETSKYYXTIIXAPGHRDFIKNMITGTSQADCAVLIVA 401
GITIDIALWKFET+KYY TII APGHRDFIKNMITGTSQADCAVL+VA
Sbjct: 70 GITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVA 117
Score = 47.2 bits (107), Expect(2) = 7e-29
Identities = 23/43 (53%), Positives = 24/43 (55%)
Frame = +3
Query: 507 NKMDSTEPPYSEPXFEXXXXXXXXXXXXXGYNPAAVAFVAISG 635
NKMDSTEPP+SE F GYNP AV FV ISG
Sbjct: 119 NKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISG 161
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 138 bits (335), Expect = 3e-33
Identities = 63/67 (94%), Positives = 64/67 (95%)
Frame = +1
Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 231
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 232 DKLKAER 252
DKLK +
Sbjct: 61 DKLKVTK 67
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 107 bits (258), Expect = 5e-24
Identities = 53/99 (53%), Positives = 67/99 (67%)
Frame = +3
Query: 258 GITIDIALWKFETSKYYXTIIXAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 437
G+T+DI FETS ++ APGH+DFI NMITGTSQAD A+L+V A TGEFE G
Sbjct: 233 GVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEFETGFEN 292
Query: 438 NGQTREHALLAFXLGVKQLXRRSNKMDSTEPPYSEPXFE 554
GQT+EHALL LGV QL NK+D+ + +S+ F+
Sbjct: 293 GGQTKEHALLLRSLGVTQLIVAVNKLDTVD--WSQDRFD 329
Score = 81.8 bits (193), Expect = 4e-16
Identities = 35/65 (53%), Positives = 48/65 (73%)
Frame = +1
Query: 61 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 240
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 167 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 226
Query: 241 KAERD 255
+ ER+
Sbjct: 227 EEERE 231
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 107 bits (258), Expect = 5e-24
Identities = 53/99 (53%), Positives = 67/99 (67%)
Frame = +3
Query: 258 GITIDIALWKFETSKYYXTIIXAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 437
G+T+DI FETS ++ APGH+DFI NMITGTSQAD A+L+V A TGEFE G
Sbjct: 251 GVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEFETGFEN 310
Query: 438 NGQTREHALLAFXLGVKQLXRRSNKMDSTEPPYSEPXFE 554
GQT+EHALL LGV QL NK+D+ + +S+ F+
Sbjct: 311 GGQTKEHALLLRSLGVTQLIVAVNKLDTVD--WSQDRFD 347
Score = 81.8 bits (193), Expect = 4e-16
Identities = 35/65 (53%), Positives = 48/65 (73%)
Frame = +1
Query: 61 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 240
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 185 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 244
Query: 241 KAERD 255
+ ER+
Sbjct: 245 EEERE 249
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 105 bits (253), Expect = 2e-23
Identities = 52/128 (40%), Positives = 72/128 (56%), Gaps = 1/128 (0%)
Frame = +3
Query: 258 GITIDIALWKFETSKYYXTIIXAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 437
G T+++ FET K + TI+ APGH+ F+ NMI G +QAD AVL+++A GEFE G +
Sbjct: 172 GKTVEVGRAYFETEKRHFTILDAPGHKSFVPNMIVGANQADLAVLVISARRGEFETGFDR 231
Query: 438 NGQTREHALLAFXLGVKQLXRRSNKMDSTEPPYSEPXFEXXXXXXXXXXXXXGYNPAA-V 614
GQTREH++L GVK L NKMD + E F+ G+NP +
Sbjct: 232 GGQTREHSMLVKTAGVKHLVILVNKMDDPTVKWEEERFKEIEGKLTPFLRKLGFNPKTDI 291
Query: 615 AFVAISGM 638
+V SG+
Sbjct: 292 TYVPCSGL 299
Score = 77.8 bits (183), Expect = 7e-15
Identities = 33/67 (49%), Positives = 48/67 (71%)
Frame = +1
Query: 55 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLD 234
G K HIN+V +GHVD+GKST G L++ G +DKRT+EK+E+EA+E G+ S+ +W +D
Sbjct: 104 GTHKEHINMVFVGHVDAGKSTIGGQLMFLTGMVDKRTLEKYEREAKEKGRESWYLSWCMD 163
Query: 235 KLKAERD 255
ER+
Sbjct: 164 TNDEERE 170
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 69.3 bits (162), Expect = 2e-12
Identities = 41/90 (45%), Positives = 52/90 (57%)
Frame = +3
Query: 258 GITIDIALWKFETSKYYXTIIXAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 437
GITI++A +E+ + PGH DFIKNMI GTSQ D AVL++AA G E
Sbjct: 93 GITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGVME----- 147
Query: 438 NGQTREHALLAFXLGVKQLXRRSNKMDSTE 527
QT+EH +LA +GVK + NK D E
Sbjct: 148 --QTKEHLILAKQVGVKNMAIFINKADLVE 175
Score = 28.7 bits (61), Expect = 4.0
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1
Query: 64 KTHINIVVIGHVDSGKSTTT 123
K ++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 69.3 bits (162), Expect = 2e-12
Identities = 41/90 (45%), Positives = 52/90 (57%)
Frame = +3
Query: 258 GITIDIALWKFETSKYYXTIIXAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 437
GITI++A +E+ + PGH DFIKNMI GTSQ D AVL++AA G E
Sbjct: 93 GITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGVME----- 147
Query: 438 NGQTREHALLAFXLGVKQLXRRSNKMDSTE 527
QT+EH +LA +GVK + NK D E
Sbjct: 148 --QTKEHLILAKQVGVKNMAIFINKADLVE 175
Score = 28.7 bits (61), Expect = 4.0
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1
Query: 64 KTHINIVVIGHVDSGKSTTT 123
K ++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 64.1 bits (149), Expect = 9e-11
Identities = 36/76 (47%), Positives = 47/76 (61%)
Frame = +3
Query: 258 GITIDIALWKFETSKYYXTIIXAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 437
GITI+ ++ET+K + I PGH D+IKNMITG +Q + A+L+VAA G
Sbjct: 97 GITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP----- 151
Query: 438 NGQTREHALLAFXLGV 485
QTREH LLA +GV
Sbjct: 152 --QTREHLLLARQVGV 165
Score = 36.3 bits (80), Expect = 0.020
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +1
Query: 58 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 228
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 45 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 104
Query: 229 LDKLKAER 252
L+ A+R
Sbjct: 105 LEYETAKR 112
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 64.1 bits (149), Expect = 9e-11
Identities = 36/76 (47%), Positives = 47/76 (61%)
Frame = +3
Query: 258 GITIDIALWKFETSKYYXTIIXAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 437
GITI+ ++ET+K + I PGH D+IKNMITG +Q + A+L+VAA G
Sbjct: 98 GITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP----- 152
Query: 438 NGQTREHALLAFXLGV 485
QTREH LLA +GV
Sbjct: 153 --QTREHLLLARQVGV 166
Score = 36.3 bits (80), Expect = 0.020
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +1
Query: 58 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 228
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 105
Query: 229 LDKLKAER 252
L+ A+R
Sbjct: 106 LEYETAKR 113
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 64.1 bits (149), Expect = 9e-11
Identities = 36/76 (47%), Positives = 47/76 (61%)
Frame = +3
Query: 258 GITIDIALWKFETSKYYXTIIXAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 437
GITI+ ++ET+K + I PGH D+IKNMITG +Q + A+L+VAA G
Sbjct: 98 GITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP----- 152
Query: 438 NGQTREHALLAFXLGV 485
QTREH LLA +GV
Sbjct: 153 --QTREHLLLARQVGV 166
Score = 36.3 bits (80), Expect = 0.020
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +1
Query: 58 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 228
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 105
Query: 229 LDKLKAER 252
L+ A+R
Sbjct: 106 LEYETAKR 113
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 34.3 bits (75), Expect = 0.081
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +1
Query: 76 NIVVIGHVDSGKSTTTGHLIYKCGGI 153
NI VI HVD+GK+T T L+Y G I
Sbjct: 27 NIGVIAHVDAGKTTVTERLLYLAGAI 52
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 33.1 bits (72), Expect = 0.19
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +1
Query: 76 NIVVIGHVDSGKSTTTGHLIYKCGGID 156
NI + H+DSGK+T T ++Y G ID
Sbjct: 46 NIGISAHIDSGKTTVTERILYYAGRID 72
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 33.1 bits (72), Expect = 0.19
Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +3
Query: 258 GITIDIALWKFETSK-YYXTIIXAPGHRDFIKNMITGTSQADCAVLIVAAGTG 413
GIT I + E +K T + PGH F G AD VL+VAA G
Sbjct: 188 GITQHIGAFSVELTKGRRVTFLDTPGHAAFASMRARGAKGADIVVLVVAADDG 240
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 32.7 bits (71), Expect = 0.25
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +1
Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 147
M +++ N+ VI HVD GKST T L+ K G
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 32.7 bits (71), Expect = 0.25
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +1
Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 147
M +++ N+ VI HVD GKST T L+ K G
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 32.3 bits (70), Expect = 0.32
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = +1
Query: 76 NIVVIGHVDSGKSTTTGHLIYKCGGI---DKRTIEKFEKEAQ 192
N ++ HVD GKST L+ CG + K+ ++K + E +
Sbjct: 44 NFGIVAHVDHGKSTLADRLLEMCGAVPPGQKQMLDKLQVERE 85
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = +3
Query: 258 GITIDIALWKFETSKYYXTIIXAPGHRDFIKNMITGTSQADCAVLIVAAGTG 413
GIT+ Y +I PGH DF + + D +L+VAA G
Sbjct: 87 GITVKAQTAALRHRGYLLNLIDTPGHVDFSAEVSRSLAVCDGILLLVAANQG 138
>Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical
protein F54D5.5b protein.
Length = 492
Score = 31.1 bits (67), Expect = 0.75
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 154 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERD 255
+KR ++ EKE + F Y LDK+K ERD
Sbjct: 272 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 305
>Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical
protein F54D5.5a protein.
Length = 427
Score = 31.1 bits (67), Expect = 0.75
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 154 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERD 255
+KR ++ EKE + F Y LDK+K ERD
Sbjct: 207 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 240
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 31.1 bits (67), Expect = 0.75
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +1
Query: 28 FVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 138
++IRD P K+ + V+G+VD+GKST G L +
Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 31.1 bits (67), Expect = 0.75
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +1
Query: 28 FVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 138
++IRD P K+ + V+G+VD+GKST G L +
Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 28.7 bits (61), Expect = 4.0
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +1
Query: 73 INIVVIGHVDSGKSTTT 123
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 28.7 bits (61), Expect = 4.0
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +1
Query: 73 INIVVIGHVDSGKSTTT 123
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>AF040643-5|AAT81201.1| 299|Caenorhabditis elegans Hypothetical
protein F14D2.15 protein.
Length = 299
Score = 28.3 bits (60), Expect = 5.3
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Frame = -3
Query: 494 ELFDTEXESEQGMLTGLTVLRDTSFEF-----TGTGSYDEHSAISLRGSCDH--VLDEIS 336
E + +E E G+ L V RD F + +GTGS + H ++R DH + +
Sbjct: 24 EHYTSEEEDHFGIKWWLRVTRDDQFLYVDLGKSGTGSTNFHGNFNVRVESDHGVISENFK 83
Query: 335 VSRSXNDGXI 306
S S +D I
Sbjct: 84 FSGSKSDAEI 93
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,140,841
Number of Sequences: 27780
Number of extensions: 262469
Number of successful extensions: 686
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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