Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060559.seq
         (676 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...   207   9e-56
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...   207   9e-56
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...   199   2e-53
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...   196   2e-52
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    29   0.054
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    24   1.2  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    23   2.7  

>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score =  207 bits (505), Expect = 9e-56
 Identities = 103/126 (81%), Positives = 103/126 (81%)
 Frame = +3

Query: 258 GITIDIALWKFETSKYYXTIIXAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 437
           GITIDIALWKFETSKYY TII APGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK
Sbjct: 13  GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 72

Query: 438 NGQTREHALLAFXLGVKQLXRRSNKMDSTEPPYSEPXFEXXXXXXXXXXXXXGYNPAAVA 617
           NGQTREHALLAF LGVKQL    NKMDSTEPPYSE  FE             GYNPAAVA
Sbjct: 73  NGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSETRFEEIKKEVSSYIKKIGYNPAAVA 132

Query: 618 FVAISG 635
           FV ISG
Sbjct: 133 FVPISG 138



 Score = 26.2 bits (55), Expect = 0.29
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = +1

Query: 223 WVLDKLKAERD 255
           WVLDKLKAER+
Sbjct: 1   WVLDKLKAERE 11


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score =  207 bits (505), Expect = 9e-56
 Identities = 103/126 (81%), Positives = 103/126 (81%)
 Frame = +3

Query: 258 GITIDIALWKFETSKYYXTIIXAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 437
           GITIDIALWKFETSKYY TII APGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK
Sbjct: 70  GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 129

Query: 438 NGQTREHALLAFXLGVKQLXRRSNKMDSTEPPYSEPXFEXXXXXXXXXXXXXGYNPAAVA 617
           NGQTREHALLAF LGVKQL    NKMDSTEPPYSE  FE             GYNPAAVA
Sbjct: 130 NGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSETRFEEIKKEVSSYIKKIGYNPAAVA 189

Query: 618 FVAISG 635
           FV ISG
Sbjct: 190 FVPISG 195



 Score =  144 bits (349), Expect = 7e-37
 Identities = 66/68 (97%), Positives = 67/68 (98%)
 Frame = +1

Query: 52  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 231
           MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60

Query: 232 DKLKAERD 255
           DKLKAER+
Sbjct: 61  DKLKAERE 68


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score =  199 bits (486), Expect = 2e-53
 Identities = 99/122 (81%), Positives = 99/122 (81%)
 Frame = +3

Query: 270 DIALWKFETSKYYXTIIXAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT 449
           DIALWKFETSKYY TII APGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT
Sbjct: 1   DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT 60

Query: 450 REHALLAFXLGVKQLXRRSNKMDSTEPPYSEPXFEXXXXXXXXXXXXXGYNPAAVAFVAI 629
           REHALLAF LGVKQL    NKMDSTEPPYSE  FE             GYNPAAVAFV I
Sbjct: 61  REHALLAFTLGVKQLIVGVNKMDSTEPPYSETRFEEIKKEVSSYIKKIGYNPAAVAFVPI 120

Query: 630 SG 635
           SG
Sbjct: 121 SG 122


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score =  196 bits (477), Expect = 2e-52
 Identities = 97/126 (76%), Positives = 100/126 (79%)
 Frame = +3

Query: 258 GITIDIALWKFETSKYYXTIIXAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 437
           GITIDIALWKFET+KYY TII APGHRDFIKNMITGTSQADCAVLIVAAG GEFEAGISK
Sbjct: 70  GITIDIALWKFETAKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGIGEFEAGISK 129

Query: 438 NGQTREHALLAFXLGVKQLXRRSNKMDSTEPPYSEPXFEXXXXXXXXXXXXXGYNPAAVA 617
           NGQTREHALLAF LGVKQL    NKMD T+PPYSE  FE             GYN A+VA
Sbjct: 130 NGQTREHALLAFTLGVKQLIVGVNKMDMTDPPYSEARFEEIKKEVSSYIKKIGYNTASVA 189

Query: 618 FVAISG 635
           FV ISG
Sbjct: 190 FVPISG 195



 Score =  144 bits (349), Expect = 7e-37
 Identities = 66/68 (97%), Positives = 67/68 (98%)
 Frame = +1

Query: 52  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 231
           MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60

Query: 232 DKLKAERD 255
           DKLKAER+
Sbjct: 61  DKLKAERE 68


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 28.7 bits (61), Expect = 0.054
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = +3

Query: 312 TIIXAPGHRDFIKNMITGTSQADCAVLIVAAGTG 413
           T +  PGH  FI     G    D  VL+VAA  G
Sbjct: 196 TFLDTPGHAAFISMRHRGAHITDIVVLVVAADDG 229



 Score = 25.4 bits (53), Expect = 0.50
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 64  KTHINIVVIGHVDSGKST 117
           K H  + ++GHVD GK+T
Sbjct: 143 KRHPIVTIMGHVDHGKTT 160


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = +1

Query: 73  INIVVIGHVDSGKST 117
           INI  IGHV  GKST
Sbjct: 43  INIGTIGHVAHGKST 57


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -3

Query: 65  FSLPIFG*SRITNCV*Y 15
           FSLPIFG   I +C+ Y
Sbjct: 57  FSLPIFGTRWIFSCIGY 73


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,381
Number of Sequences: 438
Number of extensions: 3083
Number of successful extensions: 21
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)