Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060559.seq
(676 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 175 3e-44
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 175 3e-44
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 175 3e-44
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 175 3e-44
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,... 99 1e-21
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 89 3e-18
At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,... 67 9e-12
At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA) ide... 66 3e-11
At3g22980.1 68416.m02898 elongation factor Tu family protein sim... 33 0.23
At1g62750.1 68414.m07082 elongation factor Tu family protein sim... 33 0.23
At1g06220.2 68414.m00656 elongation factor Tu family protein sim... 32 0.40
At1g06220.1 68414.m00655 elongation factor Tu family protein sim... 32 0.40
At2g45030.1 68415.m05606 mitochondrial elongation factor, putati... 31 0.93
At1g45332.1 68414.m05195 mitochondrial elongation factor, putati... 31 0.93
At3g01360.1 68416.m00057 expressed protein contains Pfam profile... 30 1.6
At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2, p... 29 2.8
At4g20430.1 68417.m02981 subtilase family protein contains Pfam ... 29 3.8
At4g11160.1 68417.m01808 translation initiation factor IF-2, mit... 29 3.8
At5g08650.1 68418.m01029 GTP-binding protein LepA, putative 28 5.0
At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-... 28 6.6
At5g27240.1 68418.m03249 DNAJ heat shock N-terminal domain-conta... 28 6.6
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 175 bits (425), Expect = 3e-44
Identities = 84/126 (66%), Positives = 95/126 (75%)
Frame = +3
Query: 258 GITIDIALWKFETSKYYXTIIXAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 437
GITIDIALWKFET+KYY T+I APGHRDFIKNMITGTSQADCAVLI+ + TG FEAGISK
Sbjct: 70 GITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISK 129
Query: 438 NGQTREHALLAFXLGVKQLXRRSNKMDSTEPPYSEPXFEXXXXXXXXXXXXXGYNPAAVA 617
+GQTREHALLAF LGVKQ+ NKMD+T P YS+ ++ GYNP +
Sbjct: 130 DGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIIKEVSSYLKKVGYNPDKIP 189
Query: 618 FVAISG 635
FV ISG
Sbjct: 190 FVPISG 195
Score = 128 bits (310), Expect = 3e-30
Identities = 60/68 (88%), Positives = 62/68 (91%)
Frame = +1
Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 231
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 232 DKLKAERD 255
DKLKAER+
Sbjct: 61 DKLKAERE 68
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 175 bits (425), Expect = 3e-44
Identities = 84/126 (66%), Positives = 95/126 (75%)
Frame = +3
Query: 258 GITIDIALWKFETSKYYXTIIXAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 437
GITIDIALWKFET+KYY T+I APGHRDFIKNMITGTSQADCAVLI+ + TG FEAGISK
Sbjct: 70 GITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISK 129
Query: 438 NGQTREHALLAFXLGVKQLXRRSNKMDSTEPPYSEPXFEXXXXXXXXXXXXXGYNPAAVA 617
+GQTREHALLAF LGVKQ+ NKMD+T P YS+ ++ GYNP +
Sbjct: 130 DGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIIKEVSSYLKKVGYNPDKIP 189
Query: 618 FVAISG 635
FV ISG
Sbjct: 190 FVPISG 195
Score = 128 bits (310), Expect = 3e-30
Identities = 60/68 (88%), Positives = 62/68 (91%)
Frame = +1
Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 231
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 232 DKLKAERD 255
DKLKAER+
Sbjct: 61 DKLKAERE 68
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 175 bits (425), Expect = 3e-44
Identities = 84/126 (66%), Positives = 95/126 (75%)
Frame = +3
Query: 258 GITIDIALWKFETSKYYXTIIXAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 437
GITIDIALWKFET+KYY T+I APGHRDFIKNMITGTSQADCAVLI+ + TG FEAGISK
Sbjct: 70 GITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISK 129
Query: 438 NGQTREHALLAFXLGVKQLXRRSNKMDSTEPPYSEPXFEXXXXXXXXXXXXXGYNPAAVA 617
+GQTREHALLAF LGVKQ+ NKMD+T P YS+ ++ GYNP +
Sbjct: 130 DGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIIKEVSSYLKKVGYNPDKIP 189
Query: 618 FVAISG 635
FV ISG
Sbjct: 190 FVPISG 195
Score = 128 bits (310), Expect = 3e-30
Identities = 60/68 (88%), Positives = 62/68 (91%)
Frame = +1
Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 231
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 232 DKLKAERD 255
DKLKAER+
Sbjct: 61 DKLKAERE 68
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 175 bits (425), Expect = 3e-44
Identities = 84/126 (66%), Positives = 95/126 (75%)
Frame = +3
Query: 258 GITIDIALWKFETSKYYXTIIXAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 437
GITIDIALWKFET+KYY T+I APGHRDFIKNMITGTSQADCAVLI+ + TG FEAGISK
Sbjct: 70 GITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISK 129
Query: 438 NGQTREHALLAFXLGVKQLXRRSNKMDSTEPPYSEPXFEXXXXXXXXXXXXXGYNPAAVA 617
+GQTREHALLAF LGVKQ+ NKMD+T P YS+ ++ GYNP +
Sbjct: 130 DGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIIKEVSSYLKKVGYNPDKIP 189
Query: 618 FVAISG 635
FV ISG
Sbjct: 190 FVPISG 195
Score = 128 bits (310), Expect = 3e-30
Identities = 60/68 (88%), Positives = 62/68 (91%)
Frame = +1
Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 231
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 232 DKLKAERD 255
DKLKAER+
Sbjct: 61 DKLKAERE 68
>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
putative similar to EF-1-alpha-related GTP-binding
protein gi|1009232|gb|AAA79032
Length = 532
Score = 99 bits (238), Expect = 1e-21
Identities = 52/128 (40%), Positives = 71/128 (55%), Gaps = 1/128 (0%)
Frame = +3
Query: 258 GITIDIALWKFETSKYYXTIIXAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 437
G T+++ FET TI+ APGH+ ++ NMI+G SQAD VL+++A GEFE G +
Sbjct: 164 GKTVEVGRAHFETESTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYER 223
Query: 438 NGQTREHALLAFXLGVKQLXRRSNKMDSTEPPYSEPXFEXXXXXXXXXXXXXGYNPAA-V 614
GQTREH LA LGV +L NKMD +S+ ++ GYN V
Sbjct: 224 GGQTREHVQLAKTLGVSKLIVVVNKMDDPTVNWSKERYDEIEQKMVPFLKASGYNTKKDV 283
Query: 615 AFVAISGM 638
F+ ISG+
Sbjct: 284 VFLPISGL 291
Score = 68.1 bits (159), Expect = 5e-12
Identities = 28/64 (43%), Positives = 46/64 (71%)
Frame = +1
Query: 61 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 240
+K H+N+V IGHVD+GKST G +++ G +D R I+K+EKEA++ + S+ A+++D
Sbjct: 98 KKRHLNVVFIGHVDAGKSTIGGQILFLSGQVDDRQIQKYEKEAKDKSRESWYMAYIMDTN 157
Query: 241 KAER 252
+ ER
Sbjct: 158 EEER 161
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 89.0 bits (211), Expect = 3e-18
Identities = 44/128 (34%), Positives = 72/128 (56%), Gaps = 1/128 (0%)
Frame = +3
Query: 258 GITIDIALWKFETSKYYXTIIXAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 437
GIT+ +A+ F + +++ ++ +PGH+DF+ NMI G +QAD A+L++ A G FEAG
Sbjct: 302 GITMTVAVAYFNSKRHHVVLLDSPGHKDFVPNMIAGATQADAAILVIDASVGAFEAGFDN 361
Query: 438 -NGQTREHALLAFXLGVKQLXRRSNKMDSTEPPYSEPXFEXXXXXXXXXXXXXGYNPAAV 614
GQTREHA + GV+Q+ NKMD YS+ F+ + +++
Sbjct: 362 LKGQTREHARVLRGFGVEQVIVAINKMDIV--GYSKERFDLIKQHVGSFLQSCRFKDSSL 419
Query: 615 AFVAISGM 638
++ +S M
Sbjct: 420 TWIPLSAM 427
Score = 76.2 bits (179), Expect = 2e-14
Identities = 31/63 (49%), Positives = 46/63 (73%)
Frame = +1
Query: 67 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKA 246
+ +N+ ++GHVDSGKST +G L++ G I ++ + K+EKEA+ GKGSF YAW LD+
Sbjct: 238 SQLNLAIVGHVDSGKSTLSGRLLHLLGRISQKQMHKYEKEAKLQGKGSFAYAWALDESAE 297
Query: 247 ERD 255
ER+
Sbjct: 298 ERE 300
>At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,
putative similar to mitochondrial elongation factor Tu
[Arabidopsis thaliana] gi|1149571|emb|CAA61511
Length = 454
Score = 67.3 bits (157), Expect = 9e-12
Identities = 37/92 (40%), Positives = 52/92 (56%)
Frame = +3
Query: 258 GITIDIALWKFETSKYYXTIIXAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 437
GITI A ++ET+K + + PGH D++KNMITG +Q D +L+V+ G
Sbjct: 115 GITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSGPDGPMP----- 169
Query: 438 NGQTREHALLAFXLGVKQLXRRSNKMDSTEPP 533
QT+EH LLA +GV L NK+D + P
Sbjct: 170 --QTKEHILLARQVGVPSLVCFLNKVDVVDDP 199
Score = 32.7 bits (71), Expect = 0.23
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +1
Query: 58 KEKTHINIVVIGHVDSGKSTTT 123
+ K H+N+ IGHVD GK+T T
Sbjct: 63 RNKPHVNVGTIGHVDHGKTTLT 84
>At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA)
identical to SWISS-PROT:P17745 elongation factor Tu,
chloroplast precursor (EF-Tu) [Arabidopsis thaliana]
Length = 476
Score = 65.7 bits (153), Expect = 3e-11
Identities = 35/90 (38%), Positives = 50/90 (55%)
Frame = +3
Query: 258 GITIDIALWKFETSKYYXTIIXAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 437
GITI+ A ++ET + + PGH D++KNMITG +Q D A+L+V+ G
Sbjct: 127 GITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMP----- 181
Query: 438 NGQTREHALLAFXLGVKQLXRRSNKMDSTE 527
QT+EH LLA +GV + NK D +
Sbjct: 182 --QTKEHILLAKQVGVPDMVVFLNKEDQVD 209
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +1
Query: 49 KMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEK 183
K ++K H+NI IGHVD GK+T T L I +K+++
Sbjct: 72 KFERKKPHVNIGTIGHVDHGKTTLTAALTMALASIGSSVAKKYDE 116
>At3g22980.1 68416.m02898 elongation factor Tu family protein
similar to eukaryotic translation elongation factor 2
GB:NP_001952 [Homo sapiens]
Length = 1015
Score = 32.7 bits (71), Expect = 0.23
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +1
Query: 76 NIVVIGHVDSGKSTTTGHLIYKCGG 150
NI ++ HVD GK+T HLI GG
Sbjct: 11 NICILAHVDHGKTTLADHLIASSGG 35
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +3
Query: 261 ITIDIALWKFETSKYYXTIIXAPGHRDFIKNMITGTSQADCAVLIVAAGTG 413
IT+ + + Y +I +PGH DF + T +D A+++V A G
Sbjct: 60 ITMKSSSISLKYKDYSLNLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEG 110
>At1g62750.1 68414.m07082 elongation factor Tu family protein
similar to elongation factor G SP:P34811 [Glycine max
(Soybean)]
Length = 783
Score = 32.7 bits (71), Expect = 0.23
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +1
Query: 64 KTHINIVVIGHVDSGKSTTTGHLIYKCG 147
K + NI ++ H+D+GK+TTT ++Y G
Sbjct: 94 KDYRNIGIMAHIDAGKTTTTERILYYTG 121
>At1g06220.2 68414.m00656 elongation factor Tu family protein
similar to Cryptosporidium parvum elongation factor-2
GB:U21667 GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 31.9 bits (69), Expect = 0.40
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = +3
Query: 261 ITIDIALWKFETSKYYXTIIXAPGHRDFIKNMITGTSQADCAVLIVAAGTG 413
+ + + L + Y I+ PGH +F M AD AVLIV A G
Sbjct: 195 VPMSLVLEDSRSKSYLCNIMDTPGHVNFSDEMTASLRLADGAVLIVDAAEG 245
>At1g06220.1 68414.m00655 elongation factor Tu family protein
similar to Cryptosporidium parvum elongation factor-2
GB:U21667 GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 31.9 bits (69), Expect = 0.40
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = +3
Query: 261 ITIDIALWKFETSKYYXTIIXAPGHRDFIKNMITGTSQADCAVLIVAAGTG 413
+ + + L + Y I+ PGH +F M AD AVLIV A G
Sbjct: 195 VPMSLVLEDSRSKSYLCNIMDTPGHVNFSDEMTASLRLADGAVLIVDAAEG 245
>At2g45030.1 68415.m05606 mitochondrial elongation factor, putative
similar to SP|P25039 Elongation factor G 1,
mitochondrial precursor (mEF-G-1) {Saccharomyces
cerevisiae}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03764: Elongation factor
G domain IV, PF00679: Elongation factor G C-terminus
Length = 754
Score = 30.7 bits (66), Expect = 0.93
Identities = 20/67 (29%), Positives = 28/67 (41%)
Frame = +3
Query: 258 GITIDIALWKFETSKYYXTIIXAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 437
GITI A Y II PGH DF + D A+L++ + G I+
Sbjct: 118 GITIQSAATYCTWKDYKVNIIDTPGHVDFTIEVERALRVLDGAILVLCSVGGVQSQSITV 177
Query: 438 NGQTREH 458
+ Q R +
Sbjct: 178 DRQMRRY 184
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 76 NIVVIGHVDSGKSTTTGHLIYKCGGI 153
NI + H+DSGK+T T +++ G I
Sbjct: 67 NIGISAHIDSGKTTLTERVLFYTGRI 92
>At1g45332.1 68414.m05195 mitochondrial elongation factor, putative
similar to mitochondrial elongation factor GI:3917 from
[Saccharomyces cerevisiae]
Length = 754
Score = 30.7 bits (66), Expect = 0.93
Identities = 20/67 (29%), Positives = 28/67 (41%)
Frame = +3
Query: 258 GITIDIALWKFETSKYYXTIIXAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 437
GITI A Y II PGH DF + D A+L++ + G I+
Sbjct: 118 GITIQSAATYCTWKDYKVNIIDTPGHVDFTIEVERALRVLDGAILVLCSVGGVQSQSITV 177
Query: 438 NGQTREH 458
+ Q R +
Sbjct: 178 DRQMRRY 184
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 76 NIVVIGHVDSGKSTTTGHLIYKCGGI 153
NI + H+DSGK+T T +++ G I
Sbjct: 67 NIGISAHIDSGKTTLTERVLFYTGRI 92
>At3g01360.1 68416.m00057 expressed protein contains Pfam profile
PF04819: Family of unknown function (DUF716) (Plant
viral-response family)
Length = 319
Score = 29.9 bits (64), Expect = 1.6
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Frame = +3
Query: 318 IXAPGHRDFIKNMITGTSQADCAV-LIVAAGTGEFEAGISKNGQTREHALLAFXLGVKQL 494
I GH D+ + T Q +C + L+V TG F +KNG R+ LG +
Sbjct: 226 IKCKGHGDYHRAKAIATLQFNCHLALMVVVATGLFSVIANKNGYLRQDHSKYRPLGAELE 285
Query: 495 XRRSNKMDSTE 527
+ +DS E
Sbjct: 286 NLSTFTLDSDE 296
>At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2,
putative similar to ELONGATION FACTOR 2 GB:O14460 from
[Schizosaccharomyces pombe]
Length = 843
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +1
Query: 76 NIVVIGHVDSGKSTTTGHLIYKCG 147
N+ VI HVD GKST T L+ G
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVAAAG 44
>At4g20430.1 68417.m02981 subtilase family protein contains Pfam
profile: PF00082 subtilase family
Length = 856
Score = 28.7 bits (61), Expect = 3.8
Identities = 20/58 (34%), Positives = 27/58 (46%)
Frame = -3
Query: 491 LFDTEXESEQGMLTGLTVLRDTSFEFTGTGSYDEHSAISLRGSCDHVLDEISVSRSXN 318
+FDT E L G+ F +TGT ++ IS GS D L I+VS+ N
Sbjct: 714 IFDTSFEDYMSFLCGINGSAPVVFNYTGTNCLRNNATIS--GS-DLNLPSITVSKLNN 768
>At4g11160.1 68417.m01808 translation initiation factor IF-2,
mitochondrial, putative similar to SP|P46198|IF2M_BOVIN
Translation initiation factor IF-2, mitochondrial
precursor (IF-2Mt) (IF-2(Mt)) {Bos taurus}
Length = 743
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +3
Query: 312 TIIXAPGHRDFIKNMITGTSQADCAVLIVAAGTG 413
T + PGH F + G + D VL+VAA G
Sbjct: 271 TFLDTPGHAAFSEMRARGAAVTDIVVLVVAADDG 304
>At5g08650.1 68418.m01029 GTP-binding protein LepA, putative
Length = 681
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 76 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK 174
N +I H+D GKST L+ G + R +++
Sbjct: 88 NFSIIAHIDHGKSTLADKLLQVTGTVQNRDMKE 120
>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
GTP-binding protein GUF1 - Saccharomyces cerevisiae,
PIR:S50374
Length = 661
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = +1
Query: 40 D*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDK 159
D K EK N +I H+D GKST L+ G I K
Sbjct: 57 DLTKFPSEKIR-NFSIIAHIDHGKSTLADRLMELTGTIKK 95
>At5g27240.1 68418.m03249 DNAJ heat shock N-terminal domain-containing
protein
Length = 1104
Score = 27.9 bits (59), Expect = 6.6
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Frame = -3
Query: 356 HVLDEISVSRSXNDGXIVLASFEL----PESNI--DCDTESRSAFSLSNTQAYLKDPLPI 195
H ++ S+S+S DG + + + PE+ + C T + F+ N +++ K +
Sbjct: 850 HGRNDESLSQSRGDGLLTQLNGNMKSSEPETRVPSSCKTVKENTFNFENQRSWDKFQIDQ 909
Query: 194 SWASFSN 174
WA +SN
Sbjct: 910 IWAIYSN 916
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,542,265
Number of Sequences: 28952
Number of extensions: 249736
Number of successful extensions: 682
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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