Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060557.seq
(670 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09) 111 5e-25
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 99 4e-21
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 98 5e-21
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 80 1e-15
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.28
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 32 0.37
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10) 30 2.0
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 30 2.0
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26) 29 4.5
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34) 28 6.0
SB_41743| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
Length = 123
Score = 111 bits (267), Expect = 5e-25
Identities = 53/95 (55%), Positives = 68/95 (71%), Gaps = 2/95 (2%)
Frame = +1
Query: 259 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 438
+D+ L +F+T +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG GQ
Sbjct: 1 MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60
Query: 439 TREHALLAFTLGVKQLIVGVXK--MVPLNHHTVSP 537
TREHA+L +LGV QLIV + K MV L +H P
Sbjct: 61 TREHAILVRSLGVTQLIVAINKLDMVVLGYHRGKP 95
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 98.7 bits (235), Expect = 4e-21
Identities = 51/74 (68%), Positives = 54/74 (72%)
Frame = +3
Query: 45 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 224
M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+ S +
Sbjct: 1 MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEVLCFS-SCLLFM 59
Query: 225 DKLKAERESVHNRY 266
KLK E H Y
Sbjct: 60 SKLKFELPCTHKIY 73
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 98.3 bits (234), Expect = 5e-21
Identities = 42/84 (50%), Positives = 60/84 (71%)
Frame = +1
Query: 256 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 435
T+++ F+T + T++DAPGH+ F+ NMI+G +QAD VL+++A GEFE G + G
Sbjct: 209 TVEVGRAAFDTDTKHFTLLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFERGG 268
Query: 436 QTREHALLAFTLGVKQLIVGVXKM 507
QTREHA+LA T GVK L++ V KM
Sbjct: 269 QTREHAMLAKTAGVKHLVILVNKM 292
Score = 43.2 bits (97), Expect = 2e-04
Identities = 17/40 (42%), Positives = 28/40 (70%)
Frame = +3
Query: 129 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 248
Y G +DKRT+EK+E+EA+E + ++ +W LD + ER+
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERD 205
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 80.2 bits (189), Expect = 1e-15
Identities = 35/37 (94%), Positives = 36/37 (97%)
Frame = +1
Query: 256 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 366
TIDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 24 TIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60
Score = 46.8 bits (106), Expect = 2e-05
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +3
Query: 189 MGKGSFKYAWVLDKLKAERE 248
MGKGSFKYAWVLDKLKAERE
Sbjct: 1 MGKGSFKYAWVLDKLKAERE 20
>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 32.7 bits (71), Expect = 0.28
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +1
Query: 301 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 405
+T ID PGH F G + D VL+VAA G
Sbjct: 78 ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDG 112
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 32.3 bits (70), Expect = 0.37
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +3
Query: 45 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 140
M K+ N+ VI HVD GKST T L+ K G
Sbjct: 12 MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAG 43
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +1
Query: 295 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 405
+ + +ID+PGH DF + D A+++V +G
Sbjct: 99 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135
>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = +3
Query: 6 RDYTQFVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 131
R + ++R P ++ T I + V+G+V+SGKST G L Y
Sbjct: 94 RKVVEVLVRQVPD-DQQFTDIRMAVLGNVESGKSTLLGVLTY 134
>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
Length = 783
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 307 IIDAPGHRDFIKNMITGTSQADCAVLIV 390
IID PGH F G+S D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 29.9 bits (64), Expect = 2.0
Identities = 9/35 (25%), Positives = 19/35 (54%)
Frame = +1
Query: 301 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 405
+ I+D PGH+DF ++ + D ++++ G
Sbjct: 81 INILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 69 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK 167
N ++ HVD GKST L+ G I K + K
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK 1975
>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
Length = 541
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/61 (24%), Positives = 27/61 (44%)
Frame = +1
Query: 310 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 489
+D PGH + M+ G + D A+L++A QT EH + +K ++
Sbjct: 69 VDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMKLKHIL 122
Query: 490 V 492
+
Sbjct: 123 I 123
>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
Length = 240
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/47 (25%), Positives = 19/47 (40%)
Frame = +1
Query: 256 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 396
T I + + + +D PGH F G D +++VAA
Sbjct: 125 TQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAA 171
>SB_41743| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1436
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/45 (26%), Positives = 26/45 (57%)
Frame = +3
Query: 525 YSEPRFEEIKKEVSSYIKKIWLQPSCCRFSWPISGLARRQHVGSL 659
+ +P + E+K+ + I+++W+ S +S P+ + +R GSL
Sbjct: 479 FPKPLYAEVKEYIEDLIRRVWITRSKSAYSSPMVCVRKRD--GSL 521
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,960,831
Number of Sequences: 59808
Number of extensions: 439637
Number of successful extensions: 1125
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1032
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1123
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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