Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060557.seq
(670 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 175 2e-44
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 175 2e-44
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 156 1e-38
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 146 2e-35
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 139 2e-33
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 110 1e-24
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 110 1e-24
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 103 1e-22
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 66 2e-11
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 66 2e-11
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 63 2e-10
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 63 2e-10
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 63 2e-10
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 37 0.011
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 35 0.060
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 34 0.079
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 33 0.18
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 33 0.24
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 33 0.24
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 32 0.32
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 32 0.32
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 32 0.32
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 31 0.74
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 31 0.74
AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical ... 31 0.98
AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical... 31 0.98
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 30 1.7
Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical p... 29 2.3
Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical p... 29 2.3
AC084152-1|AAM69074.2| 332|Caenorhabditis elegans Hypothetical ... 29 3.0
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 29 3.9
U97002-9|AAB52261.2| 985|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical pr... 28 6.9
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 27 9.1
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 27 9.1
Z49938-5|CAD31752.1| 1467|Caenorhabditis elegans Hypothetical pr... 27 9.1
Z49938-4|CAA90189.3| 2180|Caenorhabditis elegans Hypothetical pr... 27 9.1
Z46811-2|CAD31753.1| 1467|Caenorhabditis elegans Hypothetical pr... 27 9.1
Z46811-1|CAA86842.3| 2180|Caenorhabditis elegans Hypothetical pr... 27 9.1
AF316540-1|AAK01633.1| 1487|Caenorhabditis elegans PTP-3B protein. 27 9.1
AF316539-1|AAK01632.1| 2200|Caenorhabditis elegans PTP-3A protein. 27 9.1
AF040643-5|AAT81201.1| 299|Caenorhabditis elegans Hypothetical ... 27 9.1
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 175 bits (427), Expect = 2e-44
Identities = 89/132 (67%), Positives = 98/132 (74%)
Frame = +1
Query: 256 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 435
TIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GTGEFEAGISKNG
Sbjct: 72 TIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNG 131
Query: 436 QTREHALLAFTLGVKQLIVGVXKMVPLNHHTVSPDLRKSRRKYPHTSRRFGYNPAAVAFR 615
QTREHALLA TLGVKQLIV KM + + ++ GYNP AV F
Sbjct: 132 QTREHALLAQTLGVKQLIVACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPF- 190
Query: 616 GPFLXWHGDNML 651
P ++GDNML
Sbjct: 191 VPISGFNGDNML 202
Score = 146 bits (353), Expect = 2e-35
Identities = 67/68 (98%), Positives = 67/68 (98%)
Frame = +3
Query: 45 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 224
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 225 DKLKAERE 248
DKLKAERE
Sbjct: 61 DKLKAERE 68
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 175 bits (427), Expect = 2e-44
Identities = 89/132 (67%), Positives = 98/132 (74%)
Frame = +1
Query: 256 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 435
TIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GTGEFEAGISKNG
Sbjct: 72 TIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNG 131
Query: 436 QTREHALLAFTLGVKQLIVGVXKMVPLNHHTVSPDLRKSRRKYPHTSRRFGYNPAAVAFR 615
QTREHALLA TLGVKQLIV KM + + ++ GYNP AV F
Sbjct: 132 QTREHALLAQTLGVKQLIVACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPF- 190
Query: 616 GPFLXWHGDNML 651
P ++GDNML
Sbjct: 191 VPISGFNGDNML 202
Score = 146 bits (353), Expect = 2e-35
Identities = 67/68 (98%), Positives = 67/68 (98%)
Frame = +3
Query: 45 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 224
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 225 DKLKAERE 248
DKLKAERE
Sbjct: 61 DKLKAERE 68
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 156 bits (379), Expect = 1e-38
Identities = 72/78 (92%), Positives = 76/78 (97%)
Frame = +1
Query: 256 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 435
TIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GTGEFEAGISKNG
Sbjct: 72 TIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNG 131
Query: 436 QTREHALLAFTLGVKQLI 489
QTREHALLA TLGVKQL+
Sbjct: 132 QTREHALLAQTLGVKQLV 149
Score = 146 bits (353), Expect = 2e-35
Identities = 67/68 (98%), Positives = 67/68 (98%)
Frame = +3
Query: 45 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 224
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 225 DKLKAERE 248
DKLKAERE
Sbjct: 61 DKLKAERE 68
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 146 bits (353), Expect = 2e-35
Identities = 67/68 (98%), Positives = 67/68 (98%)
Frame = +3
Query: 45 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 224
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 225 DKLKAERE 248
DKLKAERE
Sbjct: 61 DKLKAERE 68
Score = 98.3 bits (234), Expect = 4e-21
Identities = 43/46 (93%), Positives = 46/46 (100%)
Frame = +1
Query: 256 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 393
TIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA
Sbjct: 72 TIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVA 117
Score = 46.8 bits (106), Expect = 1e-05
Identities = 24/40 (60%), Positives = 26/40 (65%)
Frame = +3
Query: 510 STEPPYSEPRFEEIKKEVSSYIKKIWLQPSCCRFSWPISG 629
STEPP+SE RF EI EVS +IKKI P F PISG
Sbjct: 123 STEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFV-PISG 161
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 139 bits (336), Expect = 2e-33
Identities = 63/69 (91%), Positives = 65/69 (94%)
Frame = +3
Query: 45 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 224
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 225 DKLKAERES 251
DKLK + +
Sbjct: 61 DKLKVTKSA 69
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 110 bits (264), Expect = 1e-24
Identities = 52/84 (61%), Positives = 62/84 (73%)
Frame = +1
Query: 256 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 435
T+DI FETS + ++DAPGH+DFI NMITGTSQAD A+L+V A TGEFE G G
Sbjct: 235 TMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEFETGFENGG 294
Query: 436 QTREHALLAFTLGVKQLIVGVXKM 507
QT+EHALL +LGV QLIV V K+
Sbjct: 295 QTKEHALLLRSLGVTQLIVAVNKL 318
Score = 83.0 bits (196), Expect = 2e-16
Identities = 36/65 (55%), Positives = 48/65 (73%)
Frame = +3
Query: 54 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 233
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 167 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 226
Query: 234 KAERE 248
+ ERE
Sbjct: 227 EEERE 231
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 110 bits (264), Expect = 1e-24
Identities = 52/84 (61%), Positives = 62/84 (73%)
Frame = +1
Query: 256 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 435
T+DI FETS + ++DAPGH+DFI NMITGTSQAD A+L+V A TGEFE G G
Sbjct: 253 TMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEFETGFENGG 312
Query: 436 QTREHALLAFTLGVKQLIVGVXKM 507
QT+EHALL +LGV QLIV V K+
Sbjct: 313 QTKEHALLLRSLGVTQLIVAVNKL 336
Score = 83.0 bits (196), Expect = 2e-16
Identities = 36/65 (55%), Positives = 48/65 (73%)
Frame = +3
Query: 54 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 233
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 185 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 244
Query: 234 KAERE 248
+ ERE
Sbjct: 245 EEERE 249
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 103 bits (247), Expect = 1e-22
Identities = 49/114 (42%), Positives = 69/114 (60%)
Frame = +1
Query: 256 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 435
T+++ FET K + TI+DAPGH+ F+ NMI G +QAD AVL+++A GEFE G + G
Sbjct: 174 TVEVGRAYFETEKRHFTILDAPGHKSFVPNMIVGANQADLAVLVISARRGEFETGFDRGG 233
Query: 436 QTREHALLAFTLGVKQLIVGVXKMVPLNHHTVSPDLRKSRRKYPHTSRRFGYNP 597
QTREH++L T GVK L++ V KM ++ K R+ G+NP
Sbjct: 234 QTREHSMLVKTAGVKHLVILVNKMDDPTVKWEEERFKEIEGKLTPFLRKLGFNP 287
Score = 79.0 bits (186), Expect = 3e-15
Identities = 34/67 (50%), Positives = 48/67 (71%)
Frame = +3
Query: 48 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLD 227
G K HIN+V +GHVD+GKST G L++ G +DKRT+EK+E+EA+E G+ S+ +W +D
Sbjct: 104 GTHKEHINMVFVGHVDAGKSTIGGQLMFLTGMVDKRTLEKYEREAKEKGRESWYLSWCMD 163
Query: 228 KLKAERE 248
ERE
Sbjct: 164 TNDEERE 170
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 66.5 bits (155), Expect = 2e-11
Identities = 37/83 (44%), Positives = 50/83 (60%)
Frame = +1
Query: 256 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 435
TI++A +E+ + D PGH DFIKNMI GTSQ D AVL++AA G E
Sbjct: 95 TINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGVME------- 147
Query: 436 QTREHALLAFTLGVKQLIVGVXK 504
QT+EH +LA +GVK + + + K
Sbjct: 148 QTKEHLILAKQVGVKNMAIFINK 170
Score = 28.7 bits (61), Expect = 3.9
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +3
Query: 57 KTHINIVVIGHVDSGKSTTT 116
K ++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 66.5 bits (155), Expect = 2e-11
Identities = 37/83 (44%), Positives = 50/83 (60%)
Frame = +1
Query: 256 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 435
TI++A +E+ + D PGH DFIKNMI GTSQ D AVL++AA G E
Sbjct: 95 TINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGVME------- 147
Query: 436 QTREHALLAFTLGVKQLIVGVXK 504
QT+EH +LA +GVK + + + K
Sbjct: 148 QTKEHLILAKQVGVKNMAIFINK 170
Score = 28.7 bits (61), Expect = 3.9
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +3
Query: 57 KTHINIVVIGHVDSGKSTTT 116
K ++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 62.9 bits (146), Expect = 2e-10
Identities = 35/74 (47%), Positives = 46/74 (62%)
Frame = +1
Query: 256 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 435
TI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G
Sbjct: 99 TINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP------- 151
Query: 436 QTREHALLAFTLGV 477
QTREH LLA +GV
Sbjct: 152 QTREHLLLARQVGV 165
Score = 38.7 bits (86), Expect = 0.004
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Frame = +3
Query: 51 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 221
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 45 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 104
Query: 222 LDKLKAERESVH 257
L+ A+R H
Sbjct: 105 LEYETAKRHYAH 116
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 62.9 bits (146), Expect = 2e-10
Identities = 35/74 (47%), Positives = 46/74 (62%)
Frame = +1
Query: 256 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 435
TI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G
Sbjct: 100 TINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP------- 152
Query: 436 QTREHALLAFTLGV 477
QTREH LLA +GV
Sbjct: 153 QTREHLLLARQVGV 166
Score = 38.7 bits (86), Expect = 0.004
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Frame = +3
Query: 51 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 221
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 105
Query: 222 LDKLKAERESVH 257
L+ A+R H
Sbjct: 106 LEYETAKRHYAH 117
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 62.9 bits (146), Expect = 2e-10
Identities = 35/74 (47%), Positives = 46/74 (62%)
Frame = +1
Query: 256 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 435
TI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G
Sbjct: 100 TINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP------- 152
Query: 436 QTREHALLAFTLGV 477
QTREH LLA +GV
Sbjct: 153 QTREHLLLARQVGV 166
Score = 38.7 bits (86), Expect = 0.004
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Frame = +3
Query: 51 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 221
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 105
Query: 222 LDKLKAERESVH 257
L+ A+R H
Sbjct: 106 LEYETAKRHYAH 117
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 37.1 bits (82), Expect = 0.011
Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 1/106 (0%)
Frame = +1
Query: 244 VSRYTIDIALWKFET-SKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAG 420
+ R T+D+ + S + +ID PGH I+ ++ ++ D A++I+ + AG
Sbjct: 54 IRRNTLDLGFSTMTSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVII-----DVVAG 108
Query: 421 ISKNGQTREHALLAFTLGVKQLIVGVXKMVPLNHHTVSPDLRKSRR 558
I QT EH LLA ++I+ + K +S +K R+
Sbjct: 109 IQP--QTAEHLLLASKFCPNRVIIVLNKCDLAEKSKISESAKKVRK 152
Score = 28.7 bits (61), Expect = 3.9
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +3
Query: 66 INIVVIGHVDSGKSTTT 116
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 34.7 bits (76), Expect = 0.060
Identities = 26/69 (37%), Positives = 31/69 (44%)
Frame = +1
Query: 301 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 480
VT +D PGH F G AD VL+VAA G E QT + A V
Sbjct: 206 VTFLDTPGHAAFASMRARGAKGADIVVLVVAADDGVKE-------QTAQSIKFAKDANV- 257
Query: 481 QLIVGVXKM 507
QL+V V K+
Sbjct: 258 QLVVAVNKI 266
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 34.3 bits (75), Expect = 0.079
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +3
Query: 69 NIVVIGHVDSGKSTTTGHLIYKCGGI 146
NI VI HVD+GK+T T L+Y G I
Sbjct: 27 NIGVIAHVDAGKTTVTERLLYLAGAI 52
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 33.1 bits (72), Expect = 0.18
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 69 NIVVIGHVDSGKSTTTGHLIYKCGGID 149
NI + H+DSGK+T T ++Y G ID
Sbjct: 46 NIGISAHIDSGKTTVTERILYYAGRID 72
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 32.7 bits (71), Expect = 0.24
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +3
Query: 45 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 140
M +++ N+ VI HVD GKST T L+ K G
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = +1
Query: 256 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 405
T+++ K + + + + +ID+PGH DF + D A+++V +G
Sbjct: 97 TVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 146
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 32.7 bits (71), Expect = 0.24
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +3
Query: 45 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 140
M +++ N+ VI HVD GKST T L+ K G
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = +1
Query: 256 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 405
T+++ K + + + + +ID+PGH DF + D A+++V +G
Sbjct: 97 TVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALGVTDGALVVVDCVSG 146
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 32.3 bits (70), Expect = 0.32
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = +1
Query: 241 SVSRYTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 405
S+ + I + Y + IID PGH +F M AD V++V A G
Sbjct: 183 SIKSQPVSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 237
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 32.3 bits (70), Expect = 0.32
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = +1
Query: 241 SVSRYTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 405
S+ + I + Y + IID PGH +F M AD V++V A G
Sbjct: 58 SIKSQPVSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 112
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 32.3 bits (70), Expect = 0.32
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = +3
Query: 69 NIVVIGHVDSGKSTTTGHLIYKCGGI---DKRTIEKFEKEAQ 185
N ++ HVD GKST L+ CG + K+ ++K + E +
Sbjct: 44 NFGIVAHVDHGKSTLADRLLEMCGAVPPGQKQMLDKLQVERE 85
Score = 31.5 bits (68), Expect = 0.56
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 295 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 405
Y + +ID PGH DF + + D +L+VAA G
Sbjct: 102 YLLNLIDTPGHVDFSAEVSRSLAVCDGILLLVAANQG 138
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 31.1 bits (67), Expect = 0.74
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +3
Query: 21 FVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 131
++IRD P K+ + V+G+VD+GKST G L +
Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 31.1 bits (67), Expect = 0.74
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +3
Query: 21 FVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 131
++IRD P K+ + V+G+VD+GKST G L +
Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical
protein Y39G10AR.8 protein.
Length = 469
Score = 30.7 bits (66), Expect = 0.98
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 298 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 393
+V+ +D PGH + M+ G + D A L+VA
Sbjct: 128 HVSFVDCPGHDILMATMLNGAAVMDAAFLLVA 159
>AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical
protein Y54G2A.28 protein.
Length = 366
Score = 30.7 bits (66), Expect = 0.98
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = -3
Query: 503 LXTPTMSCLTPRVKASKACSRV*PFLEIPASNSPVPAATMSTA 375
L PT+SC+ + AS S P + PA N VP AT+S +
Sbjct: 13 LFDPTLSCMATQNSASATLSCANPTVAAPA-NDDVPEATLSVS 54
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 307 IIDAPGHRDFIKNMITGTSQADCAVLIV 390
IID PGH F G+S D A+L+V
Sbjct: 553 IIDTPGHESFSNLRTRGSSLCDFAILVV 580
>Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical
protein F54D5.5b protein.
Length = 492
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 147 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 248
+KR ++ EKE + F Y LDK+K ER+
Sbjct: 272 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 305
>Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical
protein F54D5.5a protein.
Length = 427
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 147 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 248
+KR ++ EKE + F Y LDK+K ER+
Sbjct: 207 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 240
>AC084152-1|AAM69074.2| 332|Caenorhabditis elegans Hypothetical
protein Y102A11A.9 protein.
Length = 332
Score = 29.1 bits (62), Expect = 3.0
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +3
Query: 144 IDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERESVHNRYCSLEVRN 287
+DK ++ KE E+ K KYA KLK + + V N Y S+ +N
Sbjct: 188 LDKSRVKTASKERNELAK---KYAEQNAKLKLKLKEVKNNYASMLEKN 232
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 28.7 bits (61), Expect = 3.9
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +3
Query: 66 INIVVIGHVDSGKSTTT 116
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/77 (19%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Frame = +1
Query: 244 VSRYTIDIALWKFET-SKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAG 420
+ R T+D+ + S + +ID PGH I+ ++ ++ D A+ +++ + G
Sbjct: 54 IRRNTLDLGFSTMTSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAI-VISESAKKVRKG 112
Query: 421 ISKNGQTREHALLAFTL 471
+ G ++ +L
Sbjct: 113 LKSMGVDENSPIVEMSL 129
>U97002-9|AAB52261.2| 985|Caenorhabditis elegans Hypothetical
protein K09H11.1 protein.
Length = 985
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -2
Query: 333 ISVSRSIND-GNIVLASFELPESNIDCVPTHAQPL 232
+S ++I+D GNI+ +F P DC+P P+
Sbjct: 197 VSSQQAIHDLGNILKLNFSYPPETRDCIPREVLPI 231
>Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical
protein D1081.4 protein.
Length = 381
Score = 27.9 bits (59), Expect = 6.9
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +1
Query: 301 VTIIDAPGHRDFI--KNMITGTSQADCAVLIVAA 396
V IID+ G RDFI KN+ GT AD +++ AA
Sbjct: 73 VQIIDSSGSRDFIGMKNLYIGT--ADAFLVVFAA 104
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 27.5 bits (58), Expect = 9.1
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +1
Query: 301 VTIIDAPGHRDFIKNMITGTSQADCAVLIV 390
+ +ID+PGH DF + + +D A+L++
Sbjct: 85 INLIDSPGHVDFSGEVTSALILSDIALLLI 114
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 27.5 bits (58), Expect = 9.1
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +1
Query: 301 VTIIDAPGHRDFIKNMITGTSQADCAVLIV 390
+ +ID+PGH DF + + +D A+L++
Sbjct: 85 INLIDSPGHVDFSGEVTSALILSDIALLLI 114
>Z49938-5|CAD31752.1| 1467|Caenorhabditis elegans Hypothetical
protein C09D8.1b protein.
Length = 1467
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = +1
Query: 199 DPSNMLGYWTN*RLSVSRYTIDIALWKFETSK---YYVTIIDAPGHR 330
DP+ ++G TN R+ + + + W FE+ K + V + PG+R
Sbjct: 338 DPAALVGPPTNVRVEATSNSTAVVQWDFESQKADSFVVKYMHEPGNR 384
>Z49938-4|CAA90189.3| 2180|Caenorhabditis elegans Hypothetical protein
C09D8.1a protein.
Length = 2180
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = +1
Query: 199 DPSNMLGYWTN*RLSVSRYTIDIALWKFETSK---YYVTIIDAPGHR 330
DP+ ++G TN R+ + + + W FE+ K + V + PG+R
Sbjct: 1051 DPAALVGPPTNVRVEATSNSTAVVQWDFESQKADSFVVKYMHEPGNR 1097
>Z46811-2|CAD31753.1| 1467|Caenorhabditis elegans Hypothetical
protein C09D8.1b protein.
Length = 1467
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = +1
Query: 199 DPSNMLGYWTN*RLSVSRYTIDIALWKFETSK---YYVTIIDAPGHR 330
DP+ ++G TN R+ + + + W FE+ K + V + PG+R
Sbjct: 338 DPAALVGPPTNVRVEATSNSTAVVQWDFESQKADSFVVKYMHEPGNR 384
>Z46811-1|CAA86842.3| 2180|Caenorhabditis elegans Hypothetical protein
C09D8.1a protein.
Length = 2180
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = +1
Query: 199 DPSNMLGYWTN*RLSVSRYTIDIALWKFETSK---YYVTIIDAPGHR 330
DP+ ++G TN R+ + + + W FE+ K + V + PG+R
Sbjct: 1051 DPAALVGPPTNVRVEATSNSTAVVQWDFESQKADSFVVKYMHEPGNR 1097
>AF316540-1|AAK01633.1| 1487|Caenorhabditis elegans PTP-3B protein.
Length = 1487
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = +1
Query: 199 DPSNMLGYWTN*RLSVSRYTIDIALWKFETSK---YYVTIIDAPGHR 330
DP+ ++G TN R+ + + + W FE+ K + V + PG+R
Sbjct: 338 DPAALVGPPTNVRVEATSNSTAVVQWDFESQKADSFVVKYMHEPGNR 384
>AF316539-1|AAK01632.1| 2200|Caenorhabditis elegans PTP-3A protein.
Length = 2200
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = +1
Query: 199 DPSNMLGYWTN*RLSVSRYTIDIALWKFETSK---YYVTIIDAPGHR 330
DP+ ++G TN R+ + + + W FE+ K + V + PG+R
Sbjct: 1051 DPAALVGPPTNVRVEATSNSTAVVQWDFESQKADSFVVKYMHEPGNR 1097
>AF040643-5|AAT81201.1| 299|Caenorhabditis elegans Hypothetical
protein F14D2.15 protein.
Length = 299
Score = 27.5 bits (58), Expect = 9.1
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Frame = -2
Query: 486 ELFDTEGESEQGMLTGLTVLRDTSFEF-----TGTGSYDEHSAISLRGSCDH--VLDEIS 328
E + +E E G+ L V RD F + +GTGS + H ++R DH + +
Sbjct: 24 EHYTSEEEDHFGIKWWLRVTRDDQFLYVDLGKSGTGSTNFHGNFNVRVESDHGVISENFK 83
Query: 327 VSRSINDGNI 298
S S +D I
Sbjct: 84 FSGSKSDAEI 93
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,508,794
Number of Sequences: 27780
Number of extensions: 327519
Number of successful extensions: 1075
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1064
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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