Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060551.seq
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe...    29   0.83 
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa...    27   2.5  
SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces...    27   2.5  
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar...    27   3.3  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    26   5.8  
SPBC1539.04 |||conserved eukaryotic protein|Schizosaccharomyces ...    25   7.7  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    25   7.7  

>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 560

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 7/66 (10%)
 Frame = +1

Query: 52  NTIKRCEWLSDDPLYI----KYHDEEWGVPQ---YDSLRLFEMLCLEGQQAGLSWLTVLK 210
           + +K  +WL D+PLYI        E+W   +   +    +    C+EG   G  W   + 
Sbjct: 282 DAVKPEDWLEDEPLYIPDPEAQKPEDWDDEEDGDWIPSEIINPKCIEGAGCG-EWKPPMI 340

Query: 211 KRENYR 228
           +  NYR
Sbjct: 341 RNPNYR 346


>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 889

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +2

Query: 443 GSKQRYP*RNLNIKGSCKSFEKKGFKFLESKTCYAFMQACGLV 571
           GS+Q YP   ++    C  F +  F    ++T ++F+Q  G V
Sbjct: 259 GSRQTYPPSGIDDSSYCSMFVETEFIVEIAQTVFSFVQVRGTV 301


>SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 378

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +1

Query: 76  LSDDPLYIKYHDEEWGVP 129
           +S D  Y++ ++EEWG+P
Sbjct: 119 VSGDATYVQLNNEEWGIP 136


>SPAC1093.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 209 LSTVNQDNPACCPSKHSISNKRKLSYCGTP 120
           L +V  D+P C P  H   ++ KLS  G P
Sbjct: 194 LDSVGIDSPWCIPLIHGFVDQAKLSVYGKP 223


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 476 NIKGSCKSFEKKGFKFLESKTCYAFMQACGLV 571
           ++ G    F K  ++FLE  T  +F + C LV
Sbjct: 661 HVDGKISIFSKTQYRFLELITSSSFYRICSLV 692


>SPBC1539.04 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 279

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 337 QFLKTLYVIYNLLEKALIFQILFGVLLEKN 426
           QF   + ++ +L E  L+F++ FGV L KN
Sbjct: 167 QFQPAMQLVASL-ETFLLFRLFFGVFLRKN 195


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
 Frame = +1

Query: 190 SWLTVLKKREN--YRQVFHGFDP*KYLILQKLNYLNLKKILALFDMKEKFKQFLKTLYVI 363
           S L++LK      + Q  +  D     +++ LN+  +KKI +  D K   +  LK + + 
Sbjct: 709 SLLSILKNSSGDLFDQAIYSLDALNAWLVE-LNHDRIKKIFSKRDQKAAGRDRLKLIKLH 767

Query: 364 YNLLEKAL 387
           Y+ L +AL
Sbjct: 768 YDHLSQAL 775


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,739,299
Number of Sequences: 5004
Number of extensions: 56047
Number of successful extensions: 125
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)