Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060551.seq
(685 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1016 + 33830751-33831387,33831470-33831527,33831620-338317... 81 6e-16
09_04_0146 - 15080906-15081322,15081556-15081697,15081804-150818... 78 6e-15
03_02_0034 - 5166987-5167010,5167596-5167659,5168071-5168174,516... 75 4e-14
08_02_1078 + 24179558-24179936,24180577-24180634,24180721-241808... 75 7e-14
06_03_0942 - 26185898-26185932,26186004-26186379,26186473-261866... 52 3e-07
04_04_0409 + 24992944-24993421,24993920-24994000,24994400-249946... 51 7e-07
02_05_0303 + 27717097-27717149,27717515-27717635,27717746-277180... 28 6.0
>01_06_1016 +
33830751-33831387,33831470-33831527,33831620-33831703,
33831819-33831954,33833191-33833451
Length = 391
Score = 81.4 bits (192), Expect = 6e-16
Identities = 35/65 (53%), Positives = 44/65 (67%), Gaps = 2/65 (3%)
Frame = +1
Query: 61 KRCEWLS--DDPLYIKYHDEEWGVPQYDSLRLFEMLCLEGQQAGLSWLTVLKKRENYRQV 234
KRC +++ DPLY+ YHDEEWGVP D LFEML L G Q G W ++LK+R YR+
Sbjct: 203 KRCSFITPYSDPLYVAYHDEEWGVPVRDDELLFEMLTLSGVQVGADWTSILKRRHVYREA 262
Query: 235 FHGFD 249
F GF+
Sbjct: 263 FSGFN 267
Score = 45.2 bits (102), Expect = 5e-05
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Frame = +2
Query: 401 YLEFCWKKTHRKLLGSKQRYP*RNLNIKGS-----CKSFEKKGFKFLESKTCYAFMQACG 565
+ ++ W + K L +Y R + +K S K ++GF+F+ ++FMQA G
Sbjct: 313 FSKYVWAFVNNKPLSPSYKYS-RKIPVKTSKSESISKDMVRRGFRFVGPTVIHSFMQAVG 371
Query: 566 LVNDHIVSC 592
L NDH+VSC
Sbjct: 372 LTNDHLVSC 380
Score = 36.7 bits (81), Expect = 0.017
Identities = 19/89 (21%), Positives = 43/89 (48%)
Frame = +3
Query: 210 KKRKLQTSFPWFRPVKISNFTKTELLELKKNSSIIRHEGKIQAIFENSLCYLQLVREGTD 389
++ + +F F ++ +T+ ++ L + G I+ N+ ++ R+
Sbjct: 255 RRHVYREAFSGFNVDAVAKYTEKQMASLSAEFGL--DLGTIRGAVNNACRISEVRRDFGS 312
Query: 390 FSDFIWSFVGKKPIVNYWVQNKDIPKETS 476
FS ++W+FV KP+ + ++ IP +TS
Sbjct: 313 FSKYVWAFVNNKPLSPSYKYSRKIPVKTS 341
>09_04_0146 -
15080906-15081322,15081556-15081697,15081804-15081887,
15081982-15082039,15084038-15084572
Length = 411
Score = 78.2 bits (184), Expect = 6e-15
Identities = 35/75 (46%), Positives = 49/75 (65%), Gaps = 2/75 (2%)
Frame = +1
Query: 64 RCEWLSD--DPLYIKYHDEEWGVPQYDSLRLFEMLCLEGQQAGLSWLTVLKKRENYRQVF 237
RC W++ DP Y +HD EWGVP +D +LFEML L G A ++W +L KRE +++VF
Sbjct: 170 RCPWVTPNTDPCYAAFHDHEWGVPVHDDKKLFEMLVLSGALAEMTWPAILSKRETFKEVF 229
Query: 238 HGFDP*KYLILQKLN 282
FDP L++ KL+
Sbjct: 230 MDFDP---LLVAKLS 241
Score = 42.3 bits (95), Expect = 3e-04
Identities = 19/88 (21%), Positives = 46/88 (52%)
Frame = +3
Query: 210 KKRKLQTSFPWFRPVKISNFTKTELLELKKNSSIIRHEGKIQAIFENSLCYLQLVREGTD 389
K+ + F F P+ ++ ++ ++L + + E +++ I EN+ L+++ E
Sbjct: 221 KRETFKEVFMDFDPLLVAKLSERKILGPCSPARSLLSEHRLRIIIENAQEVLKVIEEFGS 280
Query: 390 FSDFIWSFVGKKPIVNYWVQNKDIPKET 473
F ++ W F+ KP+V + +++P +T
Sbjct: 281 FDNYCWGFLNSKPMVGRFRHPREVPMKT 308
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Frame = +2
Query: 410 FCWKKTHRKLLGSKQRYP*RNLNIK-----GSCKSFEKKGFKFLESKTCYAFMQACGLVN 574
+CW + K + + R+P R + +K + ++GF + YAFMQA G+ N
Sbjct: 284 YCWGFLNSKPMVGRFRHP-REVPMKTPKADAMSQDLLRRGFLGVGPTVIYAFMQAVGMAN 342
Query: 575 DHIVSC 592
DH+V+C
Sbjct: 343 DHLVTC 348
>03_02_0034 -
5166987-5167010,5167596-5167659,5168071-5168174,
5168685-5168829,5168914-5169055,5169432-5169751,
5169895-5170196,5170603-5170647,5171218-5171268,
5171374-5171460,5171587-5171764,5172453-5172528,
5173018-5173234,5173604-5173909
Length = 686
Score = 75.4 bits (177), Expect = 4e-14
Identities = 29/64 (45%), Positives = 45/64 (70%), Gaps = 2/64 (3%)
Frame = +1
Query: 64 RCEWLS--DDPLYIKYHDEEWGVPQYDSLRLFEMLCLEGQQAGLSWLTVLKKRENYRQVF 237
RC W++ +PLY+ +HDEEWGVP +D +LFE+L L A ++W +L KR+ +R++F
Sbjct: 519 RCSWITVNSEPLYVAFHDEEWGVPVHDDQKLFELLTLSQALAEITWPIILNKRDEFREMF 578
Query: 238 HGFD 249
GF+
Sbjct: 579 DGFN 582
>08_02_1078 +
24179558-24179936,24180577-24180634,24180721-24180804,
24180908-24181010,24181359-24181649
Length = 304
Score = 74.5 bits (175), Expect = 7e-14
Identities = 30/68 (44%), Positives = 44/68 (64%), Gaps = 2/68 (2%)
Frame = +1
Query: 55 TIKRCEWLS--DDPLYIKYHDEEWGVPQYDSLRLFEMLCLEGQQAGLSWLTVLKKRENYR 228
++ RC W++ D Y+++HDE WGVP Y+ RLFE+L L G +W +LK+R+ YR
Sbjct: 115 SLHRCSWITKNSDEAYVQFHDECWGVPVYNDNRLFELLALSGMLIDHNWTEILKRRDMYR 174
Query: 229 QVFHGFDP 252
+ F FDP
Sbjct: 175 EAFADFDP 182
Score = 37.9 bits (84), Expect = 0.007
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = +2
Query: 428 HRKLLGSKQRY---P*RNLNIKGSCKSFEKKGFKFLESKTCYAFMQACGLVNDHIVSC 592
HR +G + + P R + K ++GF+ + Y+FMQA G+V DH+V C
Sbjct: 226 HRPTVGRYKHHKYIPFRTPKSEAVSKDLVRRGFRLVGPVIVYSFMQASGIVIDHLVDC 283
>06_03_0942 -
26185898-26185932,26186004-26186379,26186473-26186614,
26186694-26186820,26186870-26186927,26187520-26187551,
26187848-26188454
Length = 458
Score = 52.4 bits (120), Expect = 3e-07
Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 9/90 (10%)
Frame = +2
Query: 410 FCWKKTHRKLLGSKQRYP*RNLNIKGS-----CKSFEKKGFKFLESKTCYAFMQACGLVN 574
+CW + K + SK RYP R + +K K ++GF+ + Y+FMQA GL N
Sbjct: 333 YCWGFLNHKPIVSKFRYP-RQVPVKSPKADMISKDMVRRGFRGVGPTIIYSFMQAAGLTN 391
Query: 575 DHIVSCI----CRQTLQXSTID*SQAQSHS 652
DH+VSC C + T D S A S +
Sbjct: 392 DHLVSCFRFKECNEAPTLCTSDTSNANSEA 421
Score = 45.6 bits (103), Expect = 4e-05
Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Frame = +3
Query: 210 KKRKL-QTSFPWFRPVKISNFTKTELLELKKNSSIIRHEGKIQAIFENSLCYLQLVREGT 386
K+R+L + F F PV IS + +L+ ++ + E K++A+ EN+ L++V E
Sbjct: 269 KRRQLFREIFVDFDPVAISKINEKKLVAPGSVANSLLSEQKLRAVVENARQILKIVDEFG 328
Query: 387 DFSDFIWSFVGKKPIVNYWVQNKDIP 464
F + W F+ KPIV+ + + +P
Sbjct: 329 SFDRYCWGFLNHKPIVSKFRYPRQVP 354
Score = 43.6 bits (98), Expect = 1e-04
Identities = 18/36 (50%), Positives = 26/36 (72%)
Frame = +1
Query: 145 RLFEMLCLEGQQAGLSWLTVLKKRENYRQVFHGFDP 252
RLFE+L L G A L+W +LK+R+ +R++F FDP
Sbjct: 248 RLFELLVLSGALAELTWPEILKRRQLFREIFVDFDP 283
>04_04_0409 +
24992944-24993421,24993920-24994000,24994400-24994622,
24994709-24994850,24995166-24995555
Length = 437
Score = 51.2 bits (117), Expect = 7e-07
Identities = 24/78 (30%), Positives = 44/78 (56%)
Frame = +3
Query: 243 FRPVKISNFTKTELLELKKNSSIIRHEGKIQAIFENSLCYLQLVREGTDFSDFIWSFVGK 422
F PV +S ++ +++ SS + E K++ + EN+ L++V E F + WSFV
Sbjct: 267 FDPVLVSKLSEKKIIAPGSPSSTLLSEQKLRGVIENARQILKIVEEFGTFDKYCWSFVNN 326
Query: 423 KPIVNYWVQNKDIPKETS 476
KPI++ + + +P +TS
Sbjct: 327 KPILSRFRYPRQVPVKTS 344
Score = 48.4 bits (110), Expect = 5e-06
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Frame = +2
Query: 407 EFCWKKTHRKLLGSKQRYP*RNLNIKGS-----CKSFEKKGFKFLESKTCYAFMQACGLV 571
++CW + K + S+ RYP R + +K S K ++GF+ + Y FMQ G+
Sbjct: 318 KYCWSFVNNKPILSRFRYP-RQVPVKTSKADAISKDLVRRGFRSVGPTVVYTFMQVSGMT 376
Query: 572 NDHIVSC 592
NDH++SC
Sbjct: 377 NDHLISC 383
Score = 43.6 bits (98), Expect = 1e-04
Identities = 25/54 (46%), Positives = 35/54 (64%)
Frame = +1
Query: 148 LFEMLCLEGQQAGLSWLTVLKKRENYRQVFHGFDP*KYLILQKLNYLNLKKILA 309
LFE+L L G A L+W T+L KR +R+VF FDP +++ KL+ KKI+A
Sbjct: 235 LFELLVLSGALAELTWPTILNKRPIFREVFMDFDP---VLVSKLSE---KKIIA 282
>02_05_0303 +
27717097-27717149,27717515-27717635,27717746-27718057,
27718172-27718276,27718367-27718821,27718964-27719094,
27719215-27719268,27719378-27719747,27719848-27719981,
27720081-27720319
Length = 657
Score = 28.3 bits (60), Expect = 6.0
Identities = 23/64 (35%), Positives = 33/64 (51%)
Frame = +1
Query: 145 RLFEMLCLEGQQAGLSWLTVLKKRENYRQVFHGFDP*KYLILQKLNYLNLKKILALFDMK 324
+L E L +QA S ++ L RE YR+V G D K L +N ++KIL FD +
Sbjct: 79 KLGEERALLMEQADASQISEL--REAYREV--GIDLMKLLRFVDMNATGIRKILKKFDKR 134
Query: 325 EKFK 336
+K
Sbjct: 135 FGYK 138
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,879,430
Number of Sequences: 37544
Number of extensions: 294635
Number of successful extensions: 560
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 558
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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