Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060551.seq
         (685 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53390| Best HMM Match : Pox_A32 (HMM E-Value=0.14)                  29   3.5  
SB_10237| Best HMM Match : Adenine_glyco (HMM E-Value=2.7e-05)         29   3.5  
SB_34880| Best HMM Match : Methuselah_N (HMM E-Value=9.6)              29   3.5  
SB_10146| Best HMM Match : Collagen (HMM E-Value=0.09)                 29   3.5  
SB_26267| Best HMM Match : TSP_C (HMM E-Value=0)                       28   6.1  

>SB_53390| Best HMM Match : Pox_A32 (HMM E-Value=0.14)
          Length = 498

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = -1

Query: 262 DIFTGRNHG-KLVCNFLFF*VPSTKTILLVVLLSIAFQTNVNYHIVVHPILHHDTLY 95
           D  TG N   K +C F+    PS    LL+   S   +TN   H++V P++H D +Y
Sbjct: 7   DSNTGANKKYKQLCKFM----PSDNFRLLISGPSRLGKTNCLIHMLVTPLIHFDKIY 59


>SB_10237| Best HMM Match : Adenine_glyco (HMM E-Value=2.7e-05)
          Length = 251

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = +3

Query: 243 FRPVKISNFTKTELLELKKNSSIIRHEGKIQAIFENSLCYLQLVREGTDFSDFI 404
           F P K+       L  L +++ IIRH GK++++  N+   L + +E   F   I
Sbjct: 163 FDPEKVVLMGAERLENLMQDARIIRHLGKLKSVPRNAQFILDVKKEKGSFGALI 216



 Score = 28.3 bits (60), Expect = 6.1
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +1

Query: 145 RLFEMLCLEGQQAGLSWLTVLKKRENYRQVFHGFDP*KYLIL 270
           R   +L L   +AGL    V  K   + QVF GFDP K +++
Sbjct: 130 RYLSVLSLRIFRAGLKHSLVDAKWPAFEQVFFGFDPEKVVLM 171


>SB_34880| Best HMM Match : Methuselah_N (HMM E-Value=9.6)
          Length = 343

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/27 (44%), Positives = 20/27 (74%)
 Frame = -1

Query: 181 LVVLLSIAFQTNVNYHIVVHPILHHDT 101
           ++ LLS+A +TNV+Y +V   I+ H+T
Sbjct: 136 ILPLLSLAVKTNVDYQVVGSFIIQHET 162


>SB_10146| Best HMM Match : Collagen (HMM E-Value=0.09)
          Length = 536

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = -1

Query: 262 DIFTGRNHG-KLVCNFLFF*VPSTKTILLVVLLSIAFQTNVNYHIVVHPILHHDTLY 95
           D  TG N   K +C F+    PS    LL+   S + +TN   H++V P++H D +Y
Sbjct: 7   DSNTGANKKYKQLCKFM----PSDNFRLLISGPSGSGKTNCLIHMLVIPLIHFDKIY 59


>SB_26267| Best HMM Match : TSP_C (HMM E-Value=0)
          Length = 2996

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 222  LQTSFPWFRPVKISNFTKTELLELKKNSSI 311
            + T   WFRP  + N   T+ +ELKK + I
Sbjct: 934  IDTFSSWFRPDAVRNKGYTDAIELKKTAEI 963


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,092,442
Number of Sequences: 59808
Number of extensions: 363368
Number of successful extensions: 669
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)