Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060551.seq
         (685 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF101361-1|AAD17897.1|  646|Drosophila melanogaster Abnormal X s...    29   5.9  
AE014298-2448|ABC67187.1|  255|Drosophila melanogaster CG9703-PB...    29   5.9  
AE014298-2447|AAF48644.1|  646|Drosophila melanogaster CG9703-PA...    29   5.9  

>AF101361-1|AAD17897.1|  646|Drosophila melanogaster Abnormal X
           segregation protein.
          Length = 646

 Score = 29.1 bits (62), Expect = 5.9
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +1

Query: 262 LILQKLNYLNLKKI-LALFDMKEKFKQFLKTLYVIYNLLEKALIFQILFGVL 414
           L L++ N+ NLK+  L + D++  F   +   +       KALIF  LFG+L
Sbjct: 183 LYLERFNW-NLKRTKLPIEDIRNYFGSSIGLYFGFIEFYTKALIFPSLFGIL 233


>AE014298-2448|ABC67187.1|  255|Drosophila melanogaster CG9703-PB,
           isoform B protein.
          Length = 255

 Score = 29.1 bits (62), Expect = 5.9
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +1

Query: 262 LILQKLNYLNLKKI-LALFDMKEKFKQFLKTLYVIYNLLEKALIFQILFGVL 414
           L L++ N+ NLK+  L + D++  F   +   +       KALIF  LFG+L
Sbjct: 183 LYLERFNW-NLKRTKLPIEDIRNYFGSSIGLYFGFIEFYTKALIFPSLFGIL 233


>AE014298-2447|AAF48644.1|  646|Drosophila melanogaster CG9703-PA,
           isoform A protein.
          Length = 646

 Score = 29.1 bits (62), Expect = 5.9
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +1

Query: 262 LILQKLNYLNLKKI-LALFDMKEKFKQFLKTLYVIYNLLEKALIFQILFGVL 414
           L L++ N+ NLK+  L + D++  F   +   +       KALIF  LFG+L
Sbjct: 183 LYLERFNW-NLKRTKLPIEDIRNYFGSSIGLYFGFIEFYTKALIFPSLFGIL 233


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,487,506
Number of Sequences: 53049
Number of extensions: 532731
Number of successful extensions: 1093
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1093
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2992560750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)