Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060551.seq
         (685 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21310-1|AAA62519.1|  997|Caenorhabditis elegans Hypothetical pr...    31   1.0  
U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z82077-8|CAB63329.1|  459|Caenorhabditis elegans Hypothetical pr...    28   5.4  

>U21310-1|AAA62519.1|  997|Caenorhabditis elegans Hypothetical
           protein F40H6.2 protein.
          Length = 997

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
 Frame = +3

Query: 231 SFPWFRPVKISNFTKTELLELKKNSSIIRHEGKIQAI---FENSLCYLQLVREGTDFSD- 398
           + PW  PV  S    T +  L  NSS++   G+I  +   F+++  Y+       D S+ 
Sbjct: 169 NLPWTPPVSASPIEPTNVCLLNGNSSVLSRCGEIDRMLQFFDDTHVYIGFKDSIQDASNT 228

Query: 399 FIWSFVG 419
           +I+S++G
Sbjct: 229 YIYSYIG 235


>U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical
           protein F40H6.5 protein.
          Length = 1288

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
 Frame = +3

Query: 231 SFPWFRPVKISNFTKTELLELKKNSSIIRHEGKIQAI---FENSLCYLQLVREGTDFSD- 398
           + PW  PV  S    T +  L  NSS++   G+I  +   F+++   +       D S+ 
Sbjct: 170 NLPWTPPVSASPIEPTNVCLLNGNSSVLSRYGEIDRMLQFFDDTHVIIGFKDSIQDASNT 229

Query: 399 FIWSFVG 419
           FI+S++G
Sbjct: 230 FIYSYIG 236


>Z82077-8|CAB63329.1|  459|Caenorhabditis elegans Hypothetical
           protein W09C5.2 protein.
          Length = 459

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 19/67 (28%), Positives = 34/67 (50%)
 Frame = +3

Query: 255 KISNFTKTELLELKKNSSIIRHEGKIQAIFENSLCYLQLVREGTDFSDFIWSFVGKKPIV 434
           +I+N  + E      + S +R E K+  + ENS+     + +   F D + +    +PIV
Sbjct: 71  EINNLNEKESAPTHPHPSTVRVEEKLVKLVENSVSLNLTLVDTPGFGDAVNNSKCWEPIV 130

Query: 435 NYWVQNK 455
           NY V++K
Sbjct: 131 NY-VESK 136


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,817,545
Number of Sequences: 27780
Number of extensions: 303406
Number of successful extensions: 793
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)