Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060546.seq
         (686 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0816 + 6360526-6360802,6360902-6361117,6361231-6361379,636...    29   4.6  

>01_01_0816 +
           6360526-6360802,6360902-6361117,6361231-6361379,
           6361474-6361750,6362228-6362457
          Length = 382

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
 Frame = +1

Query: 64  VRTIWFHKPIPTLISKTNASRDILK---FFTG 150
           V+  WFHK  PTL S T   RD  +   FF G
Sbjct: 147 VQVEWFHKLKPTLCSTTQGCRDYFERSLFFMG 178


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,483,653
Number of Sequences: 37544
Number of extensions: 261469
Number of successful extensions: 421
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)