Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060546.seq
         (686 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_14902| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  

>SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2992

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
 Frame = -1

Query: 170 VSETRL-KPVKNFKISRDAL--VLEIKVGMGLWNHMVLT 63
           VS+  L KP  +F ++ D++  V+E +   G+WNH VL+
Sbjct: 846 VSQAPLSKPHVSFSVTVDSMKSVVEFEAPEGIWNHYVLS 884


>SB_14902| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 441

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = -1

Query: 356 VVVSLTFKCKKCLFIFC 306
           V++++T  CK CLF++C
Sbjct: 255 VIIAVTIVCKFCLFLYC 271


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,341,317
Number of Sequences: 59808
Number of extensions: 327360
Number of successful extensions: 781
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)