Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060546.seq
         (686 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g45020.1 68418.m05520 expressed protein                             29   2.2  
At5g44990.1 68418.m05517 hypothetical protein                          29   2.2  
At1g19485.1 68414.m02427 AT hook motif-containing protein contai...    29   3.8  
At2g47820.1 68415.m05968 expressed protein                             28   6.7  
At2g01280.1 68415.m00042 transcription factor IIB (TFIIB) family...    28   6.7  
At4g12330.1 68417.m01951 cytochrome P450 family protein contains...    27   8.8  

>At5g45020.1 68418.m05520 expressed protein
          Length = 325

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 19/61 (31%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
 Frame = +1

Query: 46  WELKSPVRTIWFHKPIPTLISKTNASRDILKFF-TGFNRVSETAASDIYLSSNKR*LIKT 222
           +E K  V  +W  K + T+++  N S +I++ F T FN +++T + D+Y S  +  + +T
Sbjct: 123 YEGKYTVPVLW-DKKLKTVVN--NESSEIIRMFNTEFNGIAKTPSLDLYPSHLRDVINET 179

Query: 223 N 225
           N
Sbjct: 180 N 180


>At5g44990.1 68418.m05517 hypothetical protein
          Length = 350

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
 Frame = +1

Query: 55  KSPVRTIWFHKPIPTLISKTNASRDILKFF-TGFNRVSETAASDIYLSSNKR*LIKTN 225
           K  V  +W  K + T+++  N S +IL+ F T FN V+E  + D+Y  + +  + +TN
Sbjct: 123 KYTVPVLW-DKKLKTIVN--NESSEILRMFNTEFNHVAENPSLDLYPPNLRAIIDETN 177


>At1g19485.1 68414.m02427 AT hook motif-containing protein contains
           Pfam profile: PF00730 HhH-GPD superfamily base excision
           DNA repair protein; contains Pfam PF02178: AT hook
           motif; contains Pfam PF00400: WD domain, G-beta repeat
           (5 copies); contains Prosite PS00354: HMG-I and HMG-Y
           DNA-binding domain (A+T-hook)
          Length = 815

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 43  FWELKSPVRTIWFHKPIPTLI 105
           FW+L+ P R +W   P+P  I
Sbjct: 516 FWDLRDPFRPLWDLHPVPRFI 536


>At2g47820.1 68415.m05968 expressed protein
          Length = 805

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = +1

Query: 127 DILKFFTGFNRVSETAASDIY 189
           DI+KF TG  R+S+T +SD++
Sbjct: 318 DIVKFLTGEYRMSKTRSSDLF 338


>At2g01280.1 68415.m00042 transcription factor IIB (TFIIB) family
           protein contains Pfam domain, PF00382: Transcription
           factor TFIIB repeat
          Length = 561

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +2

Query: 488 QLSRIANAFIFRP*IEEMDAADRLLRNDEHKPRDNSD-GII 607
           +L+  AN       ++E+D ++ +LR +   PR NSD G++
Sbjct: 253 RLNEFANTEAGSLTVDELDESEEILRKETFTPRPNSDKGVV 293


>At4g12330.1 68417.m01951 cytochrome P450 family protein contains
           Pfam profile:PF00067 cytochrome p450
          Length = 518

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = +1

Query: 28  EPHNYFWELKS---PVRTIWFHKPIPTLISKTNASRDILK 138
           E H YF  L     PV  +W    +  +I+ + A+RDIL+
Sbjct: 65  ELHTYFHSLAQKHGPVFKLWLGAKLTIVITSSEATRDILR 104


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,896,423
Number of Sequences: 28952
Number of extensions: 225915
Number of successful extensions: 405
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)