Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060545.seq
         (563 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    25   0.45 
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    23   1.8  
AJ850294-1|CAH64514.1|  539|Tribolium castaneum putative esteras...    22   3.2  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    21   7.3  
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    21   9.6  
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    21   9.6  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    21   9.6  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    21   9.6  

>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 25.0 bits (52), Expect = 0.45
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -3

Query: 189 KTGNKVR*NLIRSFCFGIV 133
           +TG KV  ++ ++FCFG +
Sbjct: 516 QTGGKVETSICKNFCFGFI 534


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 359 SRTTRGNKIACLFXRCSPNARFT 427
           +RT R N++  L    SP+ RFT
Sbjct: 248 ARTCRDNRLLVLAGTSSPSNRFT 270


>AJ850294-1|CAH64514.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 11/56 (19%), Positives = 26/56 (46%)
 Frame = -3

Query: 351 PSMFSFSRSEYCHSARSVSVKENFDPVSSGVNDTLVLEAEMLTWPQFFLGMADNKT 184
           P +F+    +   + R  ++ + F  + +  +D+ + + + + WPQ      DN T
Sbjct: 449 PYIFNMGLFDTSRNHRDRAMVKIFVDLLTSFSDSSIPKVKEIEWPQVPKNATDNLT 504


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +2

Query: 332 EKENIEGFYSRTTRGNKIACLFXRCSPNAR 421
           +KE++     + + GNK  CL   CS   R
Sbjct: 173 KKEDLPAAAGKASNGNKCCCL-RTCSSAKR 201


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -1

Query: 422 NXHLDCNXQRDRLSCCPSSFWSRSLRC 342
           N   DC  + D  SC   +  +R+L C
Sbjct: 129 NGKPDCKDESDENSCTVETDPNRALDC 155


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 431 LFXHGXAVDLGQMSSFYLGLGTRXNCIXLVXTIRVMVEV 547
           +F +  A  L Q+S     LGT  NCI  +    V++ V
Sbjct: 255 VFLNLVAETLPQVSDAIPLLGTYFNCIMFMVASSVVLTV 293


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 431 LFXHGXAVDLGQMSSFYLGLGTRXNCIXLVXTIRVMVEV 547
           +F +  A  L Q+S     LGT  NCI  +    V++ V
Sbjct: 255 VFLNLVAETLPQVSDAIPLLGTYFNCIMFMVASSVVLTV 293


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 431 LFXHGXAVDLGQMSSFYLGLGTRXNCIXLVXTIRVMVEV 547
           +F +  A  L Q+S     LGT  NCI  +    V++ V
Sbjct: 255 VFLNLVAETLPQVSDAIPLLGTYFNCIMFMVASSVVLTV 293


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,597
Number of Sequences: 336
Number of extensions: 2310
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13890653
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)