Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060545.seq
         (563 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual       30   0.20 
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch...    28   0.82 
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch...    27   2.5  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    25   5.8  
SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|...    25   7.7  
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    25   7.7  

>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 30.3 bits (65), Expect = 0.20
 Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
 Frame = +2

Query: 245 TNVSFTPDETGSKFSLTLTERAEWQYSEREK----ENIEGFYSRTTR 373
           T VSF P++TG  F  T+T ++++  +E  K    +N E  +S+ +R
Sbjct: 667 TRVSFNPNDTGGSFG-TITSQSQFVVNEMPKNYARDNYEALHSQESR 712


>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
           Pss1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 28.3 bits (60), Expect = 0.82
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 257 FTPDETGSKFSLTLTERAEWQYSERE 334
           FT +E  SKF   LT+  +W Y E E
Sbjct: 601 FTNEEESSKFKEMLTKAEDWLYEEGE 626


>SPBC25B2.07c |mug164||microtubule-associated
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 85  SQITDNGENKIHKTDRSSTISFLSAT 8
           SQ+ + GEN +  T+ SS I  LSA+
Sbjct: 31  SQLHNGGENSVMDTEESSAIDKLSAS 56


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 206 RKNCGQVSISASRTNVSFTPDETGSKFS 289
           RKN G  S+S S +++    DE+ S FS
Sbjct: 11  RKNPGMQSMSGSFSSLQIALDESSSNFS 38


>SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 348

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 120 YLLNTTHYKTMSHKSLIMAKIKFTK 46
           +L+N  HY    +K LI A ++F K
Sbjct: 141 FLINAPHYLNYMYKLLIEAGVEFEK 165


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1485

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 276 DRNFL*RSQNALSGNTQNVKKRTSKASTPERR 371
           D N L  +      +T + K R  KASTP+ R
Sbjct: 17  DENVLPNTTTKRKASTTSSKSRAKKASTPDLR 48


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,089,777
Number of Sequences: 5004
Number of extensions: 37316
Number of successful extensions: 99
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)