Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060545.seq
         (563 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0677 - 5039344-5039793,5040415-5040462,5040540-5040776,504...    48   4e-06
12_01_1059 - 10934937-10935446,10938224-10938271,10938383-109386...    47   1e-05
06_03_0843 + 25315089-25315417,25317274-25317310,25317439-253176...    44   1e-04
08_01_0404 - 3590296-3590409,3590529-3590819,3592414-3592461,359...    40   0.001
02_05_1073 - 33895608-33895880,33896133-33896180,33896273-338965...    40   0.001
01_06_0322 + 28472680-28473053,28474434-28474470,28474578-284748...    38   0.004
02_02_0675 + 12845980-12846111,12846211-12846363,12846954-128471...    29   3.4  
01_05_0104 + 18148396-18148642,18148797-18148886,18148972-181490...    29   3.4  

>02_01_0677 -
           5039344-5039793,5040415-5040462,5040540-5040776,
           5040862-5040898,5042474-5042491,5042801-5043153
          Length = 380

 Score = 48.4 bits (110), Expect = 4e-06
 Identities = 25/74 (33%), Positives = 38/74 (51%)
 Frame = +2

Query: 341 NIEGFYSRTTRGNKIACLFXRCSPNARFTILFXHGXAVDLGQMSSFYLGLGTRXNCIXLV 520
           N+E    RT RG ++  ++ R    AR T+L+ HG A DLGQM   ++ L    N   + 
Sbjct: 60  NVEARRLRTKRGTEVVAMYVR-QAGARLTLLYSHGNAADLGQMFELFVELSAHLNVNLMG 118

Query: 521 XTIRVMVEVAGSPQ 562
             IR + + +G  Q
Sbjct: 119 IRIRRLYDYSGYGQ 132


>12_01_1059 -
           10934937-10935446,10938224-10938271,10938383-10938619,
           10938711-10938747,10941018-10941286
          Length = 366

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 22/52 (42%), Positives = 32/52 (61%)
 Frame = +2

Query: 335 KENIEGFYSRTTRGNKIACLFXRCSPNARFTILFXHGXAVDLGQMSSFYLGL 490
           +EN+E    RT RGN +A ++ R  P+A  T+L+ HG A DLG +   +L L
Sbjct: 30  RENVEVLRLRTRRGNTVAAVYVR-HPDAATTLLYSHGNAADLGHLYQLFLHL 80


>06_03_0843 +
           25315089-25315417,25317274-25317310,25317439-25317675,
           25317745-25317792,25318144-25318577,25318675-25318759
          Length = 389

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 19/47 (40%), Positives = 28/47 (59%)
 Frame = +2

Query: 365 TTRGNKIACLFXRCSPNARFTILFXHGXAVDLGQMSSFYLGLGTRXN 505
           T RG ++  ++ R  P AR T+L+ HG A DLGQM   ++ L +  N
Sbjct: 60  TGRGTEVVAMYVR-QPGARLTLLYSHGNAADLGQMYELFVELSSHLN 105


>08_01_0404 -
           3590296-3590409,3590529-3590819,3592414-3592461,
           3592559-3592795,3593668-3593704,3594311-3594627
          Length = 347

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 17/42 (40%), Positives = 27/42 (64%)
 Frame = +2

Query: 365 TTRGNKIACLFXRCSPNARFTILFXHGXAVDLGQMSSFYLGL 490
           T +G+K+   + R +P AR T+L+ HG A DLGQ+   ++ L
Sbjct: 56  TRKGSKVVAFYLR-NPAARLTVLYSHGNAADLGQLYDLFVQL 96


>02_05_1073 -
           33895608-33895880,33896133-33896180,33896273-33896509,
           33897233-33897269,33898603-33898913
          Length = 301

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 19/42 (45%), Positives = 25/42 (59%)
 Frame = +2

Query: 365 TTRGNKIACLFXRCSPNARFTILFXHGXAVDLGQMSSFYLGL 490
           T  G ++   F R  P+AR T+L+ HG A DLGQM   +L L
Sbjct: 54  TKGGTRVVAAFWR-HPSARLTLLYSHGNAADLGQMLGLFLEL 94


>01_06_0322 +
           28472680-28473053,28474434-28474470,28474578-28474814,
           28474891-28474938,28475263-28475661
          Length = 364

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 21/56 (37%), Positives = 30/56 (53%)
 Frame = +2

Query: 332 EKENIEGFYSRTTRGNKIACLFXRCSPNARFTILFXHGXAVDLGQMSSFYLGLGTR 499
           +++  E    RT RGN+I  +  R    A  T+L+ HG A DLGQM   ++ L  R
Sbjct: 64  DEDGTEVVRLRTRRGNEIVGVHVR-HERASATLLYSHGNAADLGQMYGLFVELSRR 118


>02_02_0675 +
           12845980-12846111,12846211-12846363,12846954-12847100,
           12847372-12847656
          Length = 238

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +2

Query: 266 DETGSKFSLTLTERAEWQYSEREKENIEGFY 358
           DET SK +  +  R ++Q SE  +E+++G Y
Sbjct: 85  DETVSKLTKAIKWRQDFQVSELSEESVKGLY 115


>01_05_0104 +
           18148396-18148642,18148797-18148886,18148972-18149072,
           18149174-18149287,18149381-18149462,18149592-18149659,
           18149747-18149806,18149885-18150009,18150663-18150861,
           18150942-18151073,18151152-18151244,18151360-18152244,
           18152339-18152664,18153003-18153341,18153911-18153996,
           18154054-18154139
          Length = 1010

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +2

Query: 125 CSQTIPKQNERIKFQRTLLPVLLSAMPRKN 214
           C++T PK N   K +R LLP+ +S + R N
Sbjct: 596 CNETTPKSNRAKKKKRMLLPLGVSNINRPN 625


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,027,591
Number of Sequences: 37544
Number of extensions: 225868
Number of successful extensions: 544
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)