Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060545.seq
         (563 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39322| Best HMM Match : Abhydrolase_2 (HMM E-Value=0.0028)         117   6e-27
SB_14128| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.16 
SB_26361| Best HMM Match : fn3 (HMM E-Value=0)                         30   1.1  
SB_21487| Best HMM Match : MAM (HMM E-Value=0)                         29   2.6  
SB_14471| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.6  

>SB_39322| Best HMM Match : Abhydrolase_2 (HMM E-Value=0.0028)
          Length = 253

 Score =  117 bits (282), Expect = 6e-27
 Identities = 49/74 (66%), Positives = 62/74 (83%)
 Frame = +2

Query: 287 SLTLTERAEWQYSEREKENIEGFYSRTTRGNKIACLFXRCSPNARFTILFXHGXAVDLGQ 466
           +L L+E++EWQY ++E ++IE F ++T RGN I C+F RCSPNARFT+LF HG AVDLGQ
Sbjct: 46  ALHLSEKSEWQYGQKELDSIEAFTTKTNRGNHIGCMFIRCSPNARFTLLFSHGNAVDLGQ 105

Query: 467 MSSFYLGLGTRXNC 508
           MSSFY+GLGTR NC
Sbjct: 106 MSSFYVGLGTRINC 119



 Score = 35.9 bits (79), Expect = 0.023
 Identities = 18/35 (51%), Positives = 18/35 (51%)
 Frame = +3

Query: 150 MNGXXXXXXXXXXXXXXXXGKIAAKLAFLPPEPTY 254
           MNG                 KIAAKLAFLPPEPTY
Sbjct: 1   MNGLSFSEICCLFCCPPCPSKIAAKLAFLPPEPTY 35


>SB_14128| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1138

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 20/69 (28%), Positives = 32/69 (46%)
 Frame = -2

Query: 232 NANLAAIFPGHGGQQNRQQSSLKLNPFILFRYCL*TLVFTKHYPLQNYESQITDNGENKI 53
           +A+LA +  G   + N  QSS     FIL   C  T+V  KH     Y+S       +++
Sbjct: 419 DADLAQVISGDSYKDNGSQSSFVREFFILLSICN-TVVVNKHARPHPYQSGPPPRNTSEM 477

Query: 52  HKTDRSSTI 26
           H +D+   +
Sbjct: 478 HPSDKGINV 486


>SB_26361| Best HMM Match : fn3 (HMM E-Value=0)
          Length = 1898

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 18/51 (35%), Positives = 29/51 (56%)
 Frame = +3

Query: 207 GKIAAKLAFLPPEPTYHSLLMKRDRNFL*RSQNALSGNTQNVKKRTSKAST 359
           G  A +L++ PP  T++ LL+    N+     N ++GNT N+K  T  A+T
Sbjct: 59  GCAARRLSWPPPADTHNGLLLGYRINY---RLNGIAGNTFNLKVITEGAAT 106


>SB_21487| Best HMM Match : MAM (HMM E-Value=0)
          Length = 874

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -1

Query: 413 LDCNXQRDRLSCCPSSFWSRSLRCSLFHVLSIATQRV 303
           L C+   + +S C SS WS  LRC+     ++  Q V
Sbjct: 437 LICSGGENAVSACASSGWSDELRCTANKTAAVVCQGV 473


>SB_14471| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 327

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
 Frame = -3

Query: 381 LLPLVVLE*KPS-MFSFSRS-EYCHSARSVSVKENFDPVSS 265
           ++PL+VL    + M  +SR   YCH+A SV++   F+ VS+
Sbjct: 73  VVPLIVLSNVVAPMMEYSRGIRYCHAAISVTISLMFNSVSN 113


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,395,860
Number of Sequences: 59808
Number of extensions: 265504
Number of successful extensions: 556
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1325051197
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)