Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060545.seq
         (563 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT029124-1|ABJ17057.1|  286|Drosophila melanogaster IP15857p pro...   121   8e-28
AE014297-3717|AAF56398.2|  286|Drosophila melanogaster CG33096-P...   121   8e-28
AE014297-3716|AAF56399.2|  244|Drosophila melanogaster CG33096-P...   121   8e-28

>BT029124-1|ABJ17057.1|  286|Drosophila melanogaster IP15857p
           protein.
          Length = 286

 Score =  121 bits (291), Expect = 8e-28
 Identities = 52/84 (61%), Positives = 68/84 (80%), Gaps = 1/84 (1%)
 Frame = +2

Query: 260 TP-DETGSKFSLTLTERAEWQYSEREKENIEGFYSRTTRGNKIACLFXRCSPNARFTILF 436
           TP D+T  +++L L +RAEWQYSEREK  +E F++RT+RGN I C++ RCS NA++T+LF
Sbjct: 36  TPADDTNIRYNLQLFDRAEWQYSEREKSKVEAFFTRTSRGNLITCIYVRCSKNAKYTLLF 95

Query: 437 XHGXAVDLGQMSSFYLGLGTRXNC 508
            HG AVDLGQMSSFYL LG++ NC
Sbjct: 96  SHGNAVDLGQMSSFYLTLGSQINC 119



 Score = 33.1 bits (72), Expect = 0.27
 Identities = 14/16 (87%), Positives = 14/16 (87%)
 Frame = +3

Query: 207 GKIAAKLAFLPPEPTY 254
           G IAAKLAF PPEPTY
Sbjct: 18  GPIAAKLAFQPPEPTY 33


>AE014297-3717|AAF56398.2|  286|Drosophila melanogaster CG33096-PB,
           isoform B protein.
          Length = 286

 Score =  121 bits (291), Expect = 8e-28
 Identities = 52/84 (61%), Positives = 68/84 (80%), Gaps = 1/84 (1%)
 Frame = +2

Query: 260 TP-DETGSKFSLTLTERAEWQYSEREKENIEGFYSRTTRGNKIACLFXRCSPNARFTILF 436
           TP D+T  +++L L +RAEWQYSEREK  +E F++RT+RGN I C++ RCS NA++T+LF
Sbjct: 36  TPADDTNIRYNLQLFDRAEWQYSEREKSKVEAFFTRTSRGNLITCIYVRCSKNAKYTLLF 95

Query: 437 XHGXAVDLGQMSSFYLGLGTRXNC 508
            HG AVDLGQMSSFYL LG++ NC
Sbjct: 96  SHGNAVDLGQMSSFYLTLGSQINC 119



 Score = 33.1 bits (72), Expect = 0.27
 Identities = 14/16 (87%), Positives = 14/16 (87%)
 Frame = +3

Query: 207 GKIAAKLAFLPPEPTY 254
           G IAAKLAF PPEPTY
Sbjct: 18  GPIAAKLAFQPPEPTY 33


>AE014297-3716|AAF56399.2|  244|Drosophila melanogaster CG33096-PA,
           isoform A protein.
          Length = 244

 Score =  121 bits (291), Expect = 8e-28
 Identities = 52/84 (61%), Positives = 68/84 (80%), Gaps = 1/84 (1%)
 Frame = +2

Query: 260 TP-DETGSKFSLTLTERAEWQYSEREKENIEGFYSRTTRGNKIACLFXRCSPNARFTILF 436
           TP D+T  +++L L +RAEWQYSEREK  +E F++RT+RGN I C++ RCS NA++T+LF
Sbjct: 36  TPADDTNIRYNLQLFDRAEWQYSEREKSKVEAFFTRTSRGNLITCIYVRCSKNAKYTLLF 95

Query: 437 XHGXAVDLGQMSSFYLGLGTRXNC 508
            HG AVDLGQMSSFYL LG++ NC
Sbjct: 96  SHGNAVDLGQMSSFYLTLGSQINC 119



 Score = 33.1 bits (72), Expect = 0.27
 Identities = 14/16 (87%), Positives = 14/16 (87%)
 Frame = +3

Query: 207 GKIAAKLAFLPPEPTY 254
           G IAAKLAF PPEPTY
Sbjct: 18  GPIAAKLAFQPPEPTY 33


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,127,393
Number of Sequences: 53049
Number of extensions: 399384
Number of successful extensions: 900
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2193288294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)