Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060545.seq
         (563 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75712-10|CAB00039.2|  332|Caenorhabditis elegans Hypothetical p...    74   6e-14
Z81061-3|CAB02933.1|  232|Caenorhabditis elegans Hypothetical pr...    36   0.020
Z95559-9|CAI46625.1|  510|Caenorhabditis elegans Hypothetical pr...    33   0.19 
Z47067-3|CAA87330.2|  446|Caenorhabditis elegans Hypothetical pr...    32   0.25 
Z81134-9|CAB03452.1|  559|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z73977-1|CAA98290.1|  573|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z70308-1|CAA94351.1|  213|Caenorhabditis elegans Hypothetical pr...    28   5.3  
U12762-1|AAA62207.1|  558|Caenorhabditis elegans prolyl 4-hydrox...    28   5.3  
AL031635-12|CAA21045.1|  559|Caenorhabditis elegans Hypothetical...    28   5.3  
AJ277376-1|CAB88202.1|  268|Caenorhabditis elegans prolyl 4-hydr...    28   5.3  
AJ270999-1|CAB71298.1|  559|Caenorhabditis elegans prolyl 4-hydr...    28   5.3  
AF043702-8|ABD94094.1|  156|Caenorhabditis elegans Hypothetical ...    28   5.3  
AC006834-5|AAF40007.1|  451|Caenorhabditis elegans Hypothetical ...    28   5.3  
U55363-8|AAA97966.1|  829|Caenorhabditis elegans Germinal center...    27   9.3  

>Z75712-10|CAB00039.2|  332|Caenorhabditis elegans Hypothetical
           protein K04G2.2 protein.
          Length = 332

 Score = 74.1 bits (174), Expect = 6e-14
 Identities = 38/75 (50%), Positives = 47/75 (62%), Gaps = 2/75 (2%)
 Frame = +2

Query: 290 LTLTE-RAEWQYSEREKEN-IEGFYSRTTRGNKIACLFXRCSPNARFTILFXHGXAVDLG 463
           L L E RA W + E +  N +E   +RT R N++AC   R  PN+ FT+LF HG AVDLG
Sbjct: 67  LVLIEGRAAWPHQEVDMANCVEMRITRTRRRNRVACTMIRPLPNSHFTLLFSHGNAVDLG 126

Query: 464 QMSSFYLGLGTRXNC 508
           QM+SF  GLG   NC
Sbjct: 127 QMTSFLYGLGFHLNC 141



 Score = 28.3 bits (60), Expect = 4.0
 Identities = 10/14 (71%), Positives = 13/14 (92%)
 Frame = +3

Query: 213 IAAKLAFLPPEPTY 254
           I +KLAF+PPEP+Y
Sbjct: 46  IVSKLAFMPPEPSY 59


>Z81061-3|CAB02933.1|  232|Caenorhabditis elegans Hypothetical
           protein F14H8.4 protein.
          Length = 232

 Score = 35.9 bits (79), Expect = 0.020
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = +2

Query: 164 FQRTLLPVLLSAMPRKNCGQVSISASRTNVSFTPDETGSKFSL 292
           F RT  PVL +A+P+ N   + I+AS T+    P    SKF +
Sbjct: 187 FHRTFCPVLTNAIPKPNAPPMRIAASPTSAQIIPFYDDSKFGI 229


>Z95559-9|CAI46625.1|  510|Caenorhabditis elegans Hypothetical
           protein Y41E3.18 protein.
          Length = 510

 Score = 32.7 bits (71), Expect = 0.19
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = +2

Query: 344 IEGFYSRTTRGNKIACLFXRCSPN--ARFTILFXHGXAVDL 460
           + GF  +T   NKI C++  C      RFT+L+ H    DL
Sbjct: 241 VRGFVLKTKNKNKIGCVYVGCPDGFAPRFTLLYSHPNGSDL 281


>Z47067-3|CAA87330.2|  446|Caenorhabditis elegans Hypothetical
           protein C43C3.3 protein.
          Length = 446

 Score = 32.3 bits (70), Expect = 0.25
 Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
 Frame = +2

Query: 275 GSKFSLTLTERAEWQYSERE---KENIEGFYSRTTRGNKIACLFXRCSPNARFT 427
           GS+  +TLT+  + +Y+E     ++N +  + +TTR N + CL+ R     RF+
Sbjct: 96  GSECDVTLTDLPKHRYAETTVVLEDNADLSFGKTTRLNHVFCLYTRNVKTIRFS 149


>Z81134-9|CAB03452.1|  559|Caenorhabditis elegans Hypothetical
           protein Y47D3B.10 protein.
          Length = 559

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/52 (23%), Positives = 25/52 (48%)
 Frame = -3

Query: 327 SEYCHSARSVSVKENFDPVSSGVNDTLVLEAEMLTWPQFFLGMADNKTGNKV 172
           SE       +S++     +++ +N  L+++ ++  W +    M  NK GN V
Sbjct: 57  SEEYSKKNEISIENGLKDITNPINAFLLIKRKIFDWKEIESKMNANKAGNVV 108


>Z73977-1|CAA98290.1|  573|Caenorhabditis elegans Hypothetical
           protein T28B11.1 protein.
          Length = 573

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = +2

Query: 173 TLLPVLLSAMPRKNCGQVSISASRTNVSFTPDETGSKFSLTLTERAEWQYSEREKE 340
           T+ P  L   P+ +    S SAS ++++ T        S +   + + Q +EREKE
Sbjct: 86  TVTPSRLPRTPKNSESSDSGSASSSSIASTSSSEADSVSSSSKTKTKQQQTEREKE 141


>Z70308-1|CAA94351.1|  213|Caenorhabditis elegans Hypothetical
           protein F49E11.4 protein.
          Length = 213

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -1

Query: 218 RNFSWAWRTTKQATKFAET*SVHFVSVLFVNTSIY 114
           R  SW+ + T  ATKFAET   +   V+    SI+
Sbjct: 58  RKISWSKKLTNAATKFAETCPKNHSVVMNTGESIF 92


>U12762-1|AAA62207.1|  558|Caenorhabditis elegans prolyl
           4-hydroxylase alpha subunit protein.
          Length = 558

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/52 (23%), Positives = 25/52 (48%)
 Frame = -3

Query: 327 SEYCHSARSVSVKENFDPVSSGVNDTLVLEAEMLTWPQFFLGMADNKTGNKV 172
           SE       +S++     +++ +N  L+++ ++  W +    M  NK GN V
Sbjct: 57  SEEYSKKNEISIENGLKDITNPINAFLLIKRKIFDWKEIESKMNANKAGNVV 108


>AL031635-12|CAA21045.1|  559|Caenorhabditis elegans Hypothetical
           protein Y47D3B.10 protein.
          Length = 559

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/52 (23%), Positives = 25/52 (48%)
 Frame = -3

Query: 327 SEYCHSARSVSVKENFDPVSSGVNDTLVLEAEMLTWPQFFLGMADNKTGNKV 172
           SE       +S++     +++ +N  L+++ ++  W +    M  NK GN V
Sbjct: 57  SEEYSKKNEISIENGLKDITNPINAFLLIKRKIFDWKEIESKMNANKAGNVV 108


>AJ277376-1|CAB88202.1|  268|Caenorhabditis elegans prolyl
           4-hydroxylase alpha subunit1 protein.
          Length = 268

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/52 (23%), Positives = 25/52 (48%)
 Frame = -3

Query: 327 SEYCHSARSVSVKENFDPVSSGVNDTLVLEAEMLTWPQFFLGMADNKTGNKV 172
           SE       +S++     +++ +N  L+++ ++  W +    M  NK GN V
Sbjct: 57  SEEYSKKNEISIENGLKDITNPINAFLLIKRKIFDWKEIESKMNANKAGNVV 108


>AJ270999-1|CAB71298.1|  559|Caenorhabditis elegans prolyl
           4-hydroxylase alpha subunit1 protein.
          Length = 559

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/52 (23%), Positives = 25/52 (48%)
 Frame = -3

Query: 327 SEYCHSARSVSVKENFDPVSSGVNDTLVLEAEMLTWPQFFLGMADNKTGNKV 172
           SE       +S++     +++ +N  L+++ ++  W +    M  NK GN V
Sbjct: 57  SEEYSKKNEISIENGLKDITNPINAFLLIKRKIFDWKEIESKMNANKAGNVV 108


>AF043702-8|ABD94094.1|  156|Caenorhabditis elegans Hypothetical
           protein W03D8.5 protein.
          Length = 156

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +2

Query: 200 MPRKNCGQVSISASRTN-VSFTPDETGSKFSLTLTERAEWQYSEREKENI 346
           +P  N G+  +SA     + FTPDE   K ++T T   +  Y  +  +NI
Sbjct: 38  IPDTNTGKSHVSAYPPGQLLFTPDECQEKLTITNTHDKKIMYKLKLSDNI 87


>AC006834-5|AAF40007.1|  451|Caenorhabditis elegans Hypothetical
           protein ZK973.3 protein.
          Length = 451

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 229 ANLAAIFPGHGGQQNRQQSSLKLNPFI 149
           A L  +F GHGGQQ  +  S  L P++
Sbjct: 67  AFLFGVFDGHGGQQCSRHISTNLYPYL 93


>U55363-8|AAA97966.1|  829|Caenorhabditis elegans Germinal center
           kinase family protein2 protein.
          Length = 829

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 297 SQNALSGNTQNVKKRTSKASTPERRGAT 380
           +Q A +GN++N    TS ASTP   G T
Sbjct: 426 AQKAAAGNSKNRFSSTSIASTPSEDGLT 453


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,576,798
Number of Sequences: 27780
Number of extensions: 210377
Number of successful extensions: 537
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)