Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060545.seq
         (563 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   2.1  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    23   2.8  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   6.5  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +2

Query: 188 LLSAMPRKNCGQVSISASRTNVSFTPDETGSKFSL 292
           LL+A+P  +  +      +T  S +P E  SK  +
Sbjct: 525 LLNALPPSSMKETEEEKKKTKQSLSPSENQSKMEI 559


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 117 LLNTTHYKTMSHKSLIMAK 61
           L NT H K +SH  L+ AK
Sbjct: 294 LENTDHTKQLSHDVLLRAK 312


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = +3

Query: 519 LXLFGLWWKW 548
           + LF LWW W
Sbjct: 226 MGLFVLWWGW 235


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,990
Number of Sequences: 438
Number of extensions: 2582
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)