Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060545.seq
         (563 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g30380.1 68416.m03835 expressed protein ; expression supporte...    49   2e-06
At4g31020.2 68417.m04406 expressed protein                             47   8e-06
At4g31020.1 68417.m04405 expressed protein                             47   8e-06
At1g32190.1 68414.m03959 expressed protein                             47   8e-06
At1g13610.1 68414.m01597 expressed protein ; expression supporte...    45   3e-05
At5g38220.2 68418.m04607 expressed protein                             44   7e-05
At5g38220.1 68418.m04608 expressed protein                             44   7e-05
At3g01690.1 68416.m00101 expressed protein                             44   9e-05
At5g14390.1 68418.m01681 expressed protein                             42   2e-04
At2g24320.1 68415.m02907 hypothetical protein                          42   4e-04
At4g24760.1 68417.m03545 expressed protein                             39   0.002
At1g66900.1 68414.m07603 expressed protein                             39   0.003
At2g02400.1 68415.m00180 cinnamoyl-CoA reductase family similar ...    28   5.0  
At3g63320.1 68416.m07123 protein phosphatase 2C-related / PP2C-r...    27   8.7  
At3g44900.1 68416.m04837 cation/hydrogen exchanger, putative (CH...    27   8.7  

>At3g30380.1 68416.m03835 expressed protein ; expression supported
           by MPSS
          Length = 399

 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 26/64 (40%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
 Frame = +2

Query: 326 EREKENIEGFYSRTTRGNKIACLFXRCSPNARFTILFXHGXAVDLGQMSSFY--LGLGTR 499
           E  KEN+E    +T RGN++   + + +P A  T+L+ HG A DLGQM   +  L L  R
Sbjct: 37  ENVKENVEVLKLKTKRGNQVVAAYIK-NPTASLTLLYSHGNAADLGQMFELFSELSLHLR 95

Query: 500 XNCI 511
            N I
Sbjct: 96  VNLI 99


>At4g31020.2 68417.m04406 expressed protein
          Length = 294

 Score = 47.2 bits (107), Expect = 8e-06
 Identities = 23/51 (45%), Positives = 30/51 (58%)
 Frame = +2

Query: 338 ENIEGFYSRTTRGNKIACLFXRCSPNARFTILFXHGXAVDLGQMSSFYLGL 490
           +N+E     T  GNK+   F R  P ARFT+L+ HG A DLGQM   ++ L
Sbjct: 42  KNVEVHQLTTKSGNKVVATFWR-HPFARFTLLYSHGNAADLGQMVELFIEL 91


>At4g31020.1 68417.m04405 expressed protein
          Length = 294

 Score = 47.2 bits (107), Expect = 8e-06
 Identities = 23/51 (45%), Positives = 30/51 (58%)
 Frame = +2

Query: 338 ENIEGFYSRTTRGNKIACLFXRCSPNARFTILFXHGXAVDLGQMSSFYLGL 490
           +N+E     T  GNK+   F R  P ARFT+L+ HG A DLGQM   ++ L
Sbjct: 42  KNVEVHQLTTKSGNKVVATFWR-HPFARFTLLYSHGNAADLGQMVELFIEL 91


>At1g32190.1 68414.m03959 expressed protein
          Length = 422

 Score = 47.2 bits (107), Expect = 8e-06
 Identities = 20/43 (46%), Positives = 29/43 (67%)
 Frame = +2

Query: 362 RTTRGNKIACLFXRCSPNARFTILFXHGXAVDLGQMSSFYLGL 490
           +T RGNK+   + R +PNAR T+L+ HG A DLGQ+   ++ L
Sbjct: 59  KTRRGNKVTAFYLR-NPNARLTLLYSHGNAADLGQLFDLFVQL 100


>At1g13610.1 68414.m01597 expressed protein ; expression supported
           by MPSS
          Length = 351

 Score = 45.2 bits (102), Expect = 3e-05
 Identities = 23/49 (46%), Positives = 32/49 (65%)
 Frame = +2

Query: 338 ENIEGFYSRTTRGNKIACLFXRCSPNARFTILFXHGXAVDLGQMSSFYL 484
           ENIE    RT RGN+I  ++ + +P A+ T+LF HG A DL Q+  FY+
Sbjct: 39  ENIEVVKIRTKRGNEIVAMYVK-NPTAKLTVLFSHGNASDLAQI--FYI 84


>At5g38220.2 68418.m04607 expressed protein
          Length = 238

 Score = 44.0 bits (99), Expect = 7e-05
 Identities = 19/55 (34%), Positives = 33/55 (60%)
 Frame = +2

Query: 335 KENIEGFYSRTTRGNKIACLFXRCSPNARFTILFXHGXAVDLGQMSSFYLGLGTR 499
           +++++    +T RGN+I  ++ +  P A  T+L+ HG A DLGQM   ++ L  R
Sbjct: 39  RDDVDVLKLKTRRGNEIVAIYIK-HPKANGTLLYSHGNAADLGQMFELFIELSNR 92


>At5g38220.1 68418.m04608 expressed protein
          Length = 336

 Score = 44.0 bits (99), Expect = 7e-05
 Identities = 19/55 (34%), Positives = 33/55 (60%)
 Frame = +2

Query: 335 KENIEGFYSRTTRGNKIACLFXRCSPNARFTILFXHGXAVDLGQMSSFYLGLGTR 499
           +++++    +T RGN+I  ++ +  P A  T+L+ HG A DLGQM   ++ L  R
Sbjct: 39  RDDVDVLKLKTRRGNEIVAIYIK-HPKANGTLLYSHGNAADLGQMFELFIELSNR 92


>At3g01690.1 68416.m00101 expressed protein
          Length = 361

 Score = 43.6 bits (98), Expect = 9e-05
 Identities = 22/52 (42%), Positives = 31/52 (59%)
 Frame = +2

Query: 335 KENIEGFYSRTTRGNKIACLFXRCSPNARFTILFXHGXAVDLGQMSSFYLGL 490
           +EN+E    RT RG +I  ++ R  P A  T+L+ HG A DLGQM   ++ L
Sbjct: 41  RENVEIVKLRTRRGTEIVGMYVR-HPMATSTLLYSHGNAADLGQMYELFIEL 91


>At5g14390.1 68418.m01681 expressed protein
          Length = 369

 Score = 42.3 bits (95), Expect = 2e-04
 Identities = 21/52 (40%), Positives = 30/52 (57%)
 Frame = +2

Query: 335 KENIEGFYSRTTRGNKIACLFXRCSPNARFTILFXHGXAVDLGQMSSFYLGL 490
           +EN+E     T RG +I  ++ R  P A  T+L+ HG A DLGQM   ++ L
Sbjct: 41  RENVEILKLPTRRGTEIVAMYVR-HPMATSTLLYSHGNAADLGQMYELFIEL 91


>At2g24320.1 68415.m02907 hypothetical protein
          Length = 286

 Score = 41.5 bits (93), Expect = 4e-04
 Identities = 19/42 (45%), Positives = 26/42 (61%)
 Frame = +2

Query: 365 TTRGNKIACLFXRCSPNARFTILFXHGXAVDLGQMSSFYLGL 490
           T  GNK+   F +  P +RFT+L+ HG A DLGQM   ++ L
Sbjct: 43  TKSGNKVIATFWK-HPFSRFTLLYSHGNAADLGQMVDLFIEL 83


>At4g24760.1 68417.m03545 expressed protein
          Length = 365

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 19/52 (36%), Positives = 30/52 (57%)
 Frame = +2

Query: 335 KENIEGFYSRTTRGNKIACLFXRCSPNARFTILFXHGXAVDLGQMSSFYLGL 490
           +EN++     T RG +I  ++ R  P A  T+L+ HG A D+GQM   ++ L
Sbjct: 41  RENVDILRLPTRRGTEIVAMYIRY-PMAVTTLLYSHGNAADIGQMYELFIEL 91


>At1g66900.1 68414.m07603 expressed protein
          Length = 272

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 19/55 (34%), Positives = 32/55 (58%)
 Frame = +2

Query: 335 KENIEGFYSRTTRGNKIACLFXRCSPNARFTILFXHGXAVDLGQMSSFYLGLGTR 499
           +++++    RT  GN+I  ++ + S  A  T+L+ HG A DLGQM   ++ L  R
Sbjct: 42  RDDVDILKLRTRCGNEIVAVYVKHS-KANGTLLYSHGNAADLGQMFELFVELSNR 95


>At2g02400.1 68415.m00180 cinnamoyl-CoA reductase family similar to
           cinnamoyl-CoA reductase from Pinus taeda [GI:17978649],
           Eucalyptus gunnii [GI:2058311]
          Length = 318

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 287 SLTLTERAEWQYSEREKENIEGFYSRTTRG 376
           S TL E+A W++SE+   NI   +  T  G
Sbjct: 161 SKTLAEKAAWEFSEKHGTNIVTIHPSTCLG 190


>At3g63320.1 68416.m07123 protein phosphatase 2C-related /
           PP2C-related protein phosphatase 2C - Rattus norvegicus,
           EMBL:AF095927
          Length = 423

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -2

Query: 223 LAAIFPGHGGQQ-NRQQSSLKLNPFILFRYCL*TLVFTK 110
           +AA+F GH G + +   S L L+ F L  Y L    F+K
Sbjct: 69  IAAVFDGHSGSEASEMASQLLLDYFALHIYFLLDATFSK 107


>At3g44900.1 68416.m04837 cation/hydrogen exchanger, putative (CHX4)
           monovalent cation:proton antiporter family 2 (CPA2)
           member, PMID:11500563
          Length = 817

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 158 IKFQRTLLPVLLSAMPRKNCGQVSISAS 241
           +KF  T LP  L  MP K+C  +S+  S
Sbjct: 397 VKFALTTLPAFLYGMPAKDCIALSLIMS 424


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,743,427
Number of Sequences: 28952
Number of extensions: 191931
Number of successful extensions: 470
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1082538160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)