Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060544.seq
         (558 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.03 |bem46||esterase/lipase |Schizosaccharomyces pombe|c...    29   0.61 
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual    27   1.9  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    27   1.9  
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe...    27   1.9  
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    27   2.5  
SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase |Schizosa...    25   10.0 
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc...    25   10.0 
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    25   10.0 

>SPBC32H8.03 |bem46||esterase/lipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 28.7 bits (61), Expect = 0.61
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = +3

Query: 351 SPNARFTILFSHGNAVDLGQMSSFYLGLGTRINCNIFXXXXXXXXXXXXKPSE 509
           SP +R T+L+ H NA ++G          + +N N+F             PSE
Sbjct: 85  SPESRPTLLYFHANAGNMGHRLPIARVFYSALNMNVFIISYRGYGKSTGSPSE 137


>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 613

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -2

Query: 230 NFDPVSSGV-NAYVGSGGRNANLAAIFPGHGGQQNRQQSSL 111
           N D +++G+ N   G+GGRN N   +  G  G  + Q  SL
Sbjct: 27  NLDNINNGLHNQEDGAGGRNENSERVGSGSPGSVSMQVLSL 67


>SPCC63.04 |mok14||alpha-1,3-glucan synthase
           Mok14|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1369

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 239 VKENFDPVSSGVNAYVGSGGRNANL 165
           ++ENFD     V AYV SG  N +L
Sbjct: 74  LQENFDSFFPNVEAYVESGNSNGDL 98


>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 716

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 15/27 (55%), Positives = 18/27 (66%)
 Frame = -2

Query: 365 TSIWTATNKETGYLVAPRRSGVEAFDV 285
           TS W ATNK+    VAPR + VE+ DV
Sbjct: 499 TSFW-ATNKKIIDPVAPRHTAVESGDV 524


>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 12/82 (14%)
 Frame = +1

Query: 154  KIAAKLAFLPPEPTYAFTP--DETGSKF---SLTL-----TERAS--GNTQNVKKKTSKA 297
            +IA KL   PP+P   +TP  D   +K     LTL     T + S   +T +  +K+  +
Sbjct: 1052 EIAGKLHISPPDPHIGYTPGSDMPSAKLYDQQLTLSPSLMTNQGSNFSSTDSTPRKSINS 1111

Query: 298  STPERRGATR*PVSLFVAVQML 363
            S  E R  T  P S+   ++ L
Sbjct: 1112 SDVESRSKTDGPKSMHDLIKQL 1133


>SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = -2

Query: 305 GVEAFDVFFFTF*VLPLARSVSVKENFDPVSSGVNAYVGSGG 180
           G++  DVFFF   VLP    +S +  F+  SS   A  G+GG
Sbjct: 183 GIDKKDVFFFQQGVLP-CLDISGRVLFESDSSLAWAPNGNGG 223


>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 503

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +3

Query: 105 KFQRTLLPVLLSAMPRKNCGQVSISASRT 191
           K Q   LP+LLS  PR   GQ      +T
Sbjct: 139 KIQEKALPLLLSNPPRNMIGQSQSGTGKT 167


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
 Frame = -2

Query: 209 GVNAYVGSGGRNANLAAIFPGHGGQQNRQQS-SLKLNPFILFRYCL*TLVFTKHYPLQNY 33
           G+  Y GS  R      + P    +  R  + ++ LN  +LF  CL + V    Y  QN 
Sbjct: 454 GLVLYTGSETRIQKNRGLTPSKRSRITRDLNWTIILNFLLLFAMCLFSGVLRSIYSAQNN 513

Query: 32  EXQITDNGEN 3
             ++ +  +N
Sbjct: 514 SARVFELSKN 523


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,057,738
Number of Sequences: 5004
Number of extensions: 37320
Number of successful extensions: 87
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)