Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060544.seq
(558 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_1059 - 10934937-10935446,10938224-10938271,10938383-109386... 60 9e-10
06_03_0843 + 25315089-25315417,25317274-25317310,25317439-253176... 59 3e-09
02_01_0677 - 5039344-5039793,5040415-5040462,5040540-5040776,504... 56 2e-08
01_06_0322 + 28472680-28473053,28474434-28474470,28474578-284748... 54 1e-07
08_01_0404 - 3590296-3590409,3590529-3590819,3592414-3592461,359... 52 2e-07
02_05_1073 - 33895608-33895880,33896133-33896180,33896273-338965... 52 4e-07
01_05_0104 + 18148396-18148642,18148797-18148886,18148972-181490... 29 3.3
03_06_0654 - 35307122-35307205,35307381-35307444,35307486-353075... 28 5.8
>12_01_1059 -
10934937-10935446,10938224-10938271,10938383-10938619,
10938711-10938747,10941018-10941286
Length = 366
Score = 60.5 bits (140), Expect = 9e-10
Identities = 30/77 (38%), Positives = 42/77 (54%)
Frame = +3
Query: 279 KENIEGFYSRTXRGNKIACLFVRCSPNARFTILFSHGNAVDLGQMSSFYLGLGTRINCNI 458
+EN+E RT RGN +A ++VR P+A T+L+SHGNA DLG + +L L + N+
Sbjct: 30 RENVEVLRLRTRRGNTVAAVYVR-HPDAATTLLYSHGNAADLGHLYQLFLHLSFNLRVNV 88
Query: 459 FXXXXXXXXXXXXKPSE 509
KPSE
Sbjct: 89 LGYDYSGYGQSSGKPSE 105
>06_03_0843 +
25315089-25315417,25317274-25317310,25317439-25317675,
25317745-25317792,25318144-25318577,25318675-25318759
Length = 389
Score = 58.8 bits (136), Expect = 3e-09
Identities = 27/68 (39%), Positives = 39/68 (57%)
Frame = +3
Query: 309 TXRGNKIACLFVRCSPNARFTILFSHGNAVDLGQMSSFYLGLGTRINCNIFXXXXXXXXX 488
T RG ++ ++VR P AR T+L+SHGNA DLGQM ++ L + +N N+
Sbjct: 60 TGRGTEVVAMYVR-QPGARLTLLYSHGNAADLGQMYELFVELSSHLNVNLMGYDYSGYGQ 118
Query: 489 XXXKPSER 512
KPSE+
Sbjct: 119 SSGKPSEQ 126
>02_01_0677 -
5039344-5039793,5040415-5040462,5040540-5040776,
5040862-5040898,5042474-5042491,5042801-5043153
Length = 380
Score = 56.0 bits (129), Expect = 2e-08
Identities = 25/58 (43%), Positives = 36/58 (62%)
Frame = +3
Query: 285 NIEGFYSRTXRGNKIACLFVRCSPNARFTILFSHGNAVDLGQMSSFYLGLGTRINCNI 458
N+E RT RG ++ ++VR AR T+L+SHGNA DLGQM ++ L +N N+
Sbjct: 60 NVEARRLRTKRGTEVVAMYVR-QAGARLTLLYSHGNAADLGQMFELFVELSAHLNVNL 116
>01_06_0322 +
28472680-28473053,28474434-28474470,28474578-28474814,
28474891-28474938,28475263-28475661
Length = 364
Score = 53.6 bits (123), Expect = 1e-07
Identities = 29/78 (37%), Positives = 41/78 (52%)
Frame = +3
Query: 276 EKENIEGFYSRTXRGNKIACLFVRCSPNARFTILFSHGNAVDLGQMSSFYLGLGTRINCN 455
+++ E RT RGN+I + VR A T+L+SHGNA DLGQM ++ L R+ N
Sbjct: 64 DEDGTEVVRLRTRRGNEIVGVHVR-HERASATLLYSHGNAADLGQMYGLFVELSRRLRIN 122
Query: 456 IFXXXXXXXXXXXXKPSE 509
+F KP+E
Sbjct: 123 LFGYDYSGYGRSTGKPTE 140
>08_01_0404 -
3590296-3590409,3590529-3590819,3592414-3592461,
3592559-3592795,3593668-3593704,3594311-3594627
Length = 347
Score = 52.4 bits (120), Expect = 2e-07
Identities = 24/67 (35%), Positives = 37/67 (55%)
Frame = +3
Query: 309 TXRGNKIACLFVRCSPNARFTILFSHGNAVDLGQMSSFYLGLGTRINCNIFXXXXXXXXX 488
T +G+K+ ++R +P AR T+L+SHGNA DLGQ+ ++ L + N+
Sbjct: 56 TRKGSKVVAFYLR-NPAARLTVLYSHGNAADLGQLYDLFVQLKVNLKVNLMGYDYSGYGA 114
Query: 489 XXXKPSE 509
KPSE
Sbjct: 115 STGKPSE 121
Score = 28.7 bits (61), Expect = 3.3
Identities = 13/21 (61%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Frame = +1
Query: 157 IAAKLAFLPPEP-TYAFTPDE 216
+AA+ AF PPEP TYA DE
Sbjct: 10 LAARFAFFPPEPATYAVRKDE 30
>02_05_1073 -
33895608-33895880,33896133-33896180,33896273-33896509,
33897233-33897269,33898603-33898913
Length = 301
Score = 51.6 bits (118), Expect = 4e-07
Identities = 27/67 (40%), Positives = 34/67 (50%)
Frame = +3
Query: 309 TXRGNKIACLFVRCSPNARFTILFSHGNAVDLGQMSSFYLGLGTRINCNIFXXXXXXXXX 488
T G ++ F R P+AR T+L+SHGNA DLGQM +L L + NI
Sbjct: 54 TKGGTRVVAAFWR-HPSARLTLLYSHGNAADLGQMLGLFLELRAHLRVNIMSYDYSGYGA 112
Query: 489 XXXKPSE 509
KPSE
Sbjct: 113 STGKPSE 119
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = +1
Query: 157 IAAKLAFLPPE-PTYAFTPDETG 222
+AA+LAF PPE PTY +E G
Sbjct: 8 VAARLAFFPPEPPTYELVAEEGG 30
>01_05_0104 +
18148396-18148642,18148797-18148886,18148972-18149072,
18149174-18149287,18149381-18149462,18149592-18149659,
18149747-18149806,18149885-18150009,18150663-18150861,
18150942-18151073,18151152-18151244,18151360-18152244,
18152339-18152664,18153003-18153341,18153911-18153996,
18154054-18154139
Length = 1010
Score = 28.7 bits (61), Expect = 3.3
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 69 CSQTIPKQNERIKFQRTLLPVLLSAMPRKN 158
C++T PK N K +R LLP+ +S + R N
Sbjct: 596 CNETTPKSNRAKKKKRMLLPLGVSNINRPN 625
>03_06_0654 -
35307122-35307205,35307381-35307444,35307486-35307536,
35307881-35307993,35308083-35308164,35308621-35308741,
35308821-35308980,35309335-35309396,35309548-35309707,
35309794-35310021
Length = 374
Score = 27.9 bits (59), Expect = 5.8
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = +1
Query: 181 PPEPTYAFTPDETGSKFSLTLTERASGNTQNVKKKTSKASTP 306
PP +F P + +F L+ T +G T + ++ AS P
Sbjct: 26 PPPTLLSFAPPRSHQRFHLSATAEGAGTTAAQEGASASASAP 67
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,077,403
Number of Sequences: 37544
Number of extensions: 236463
Number of successful extensions: 627
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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