Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060544.seq
         (558 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39322| Best HMM Match : Abhydrolase_2 (HMM E-Value=0.0028)         130   1e-30
SB_1646| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.1  
SB_41191| Best HMM Match : PadR (HMM E-Value=8.6)                      29   1.9  
SB_59414| Best HMM Match : Complex1_LYR (HMM E-Value=7.7)              29   2.6  
SB_48834| Best HMM Match : PH (HMM E-Value=3.3e-05)                    29   3.4  
SB_45326| Best HMM Match : Ank (HMM E-Value=5.2)                       28   5.9  
SB_43238| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  

>SB_39322| Best HMM Match : Abhydrolase_2 (HMM E-Value=0.0028)
          Length = 253

 Score =  130 bits (313), Expect = 1e-30
 Identities = 56/86 (65%), Positives = 67/86 (77%)
 Frame = +3

Query: 255 EWQYSEREKENIEGFYSRTXRGNKIACLFVRCSPNARFTILFSHGNAVDLGQMSSFYLGL 434
           EWQY ++E ++IE F ++T RGN I C+F+RCSPNARFT+LFSHGNAVDLGQMSSFY+GL
Sbjct: 54  EWQYGQKELDSIEAFTTKTNRGNHIGCMFIRCSPNARFTLLFSHGNAVDLGQMSSFYVGL 113

Query: 435 GTRINCNIFXXXXXXXXXXXXKPSER 512
           GTRINCNIF            KPSE+
Sbjct: 114 GTRINCNIFSYDYSGYGVSTGKPSEK 139



 Score = 38.3 bits (85), Expect = 0.004
 Identities = 22/54 (40%), Positives = 28/54 (51%)
 Frame = +1

Query: 94  MNGXXXXXXXXXXXXXXXXGKIAAKLAFLPPEPTYAFTPDETGSKFSLTLTERA 255
           MNG                 KIAAKLAFLPPEPTY+      G + +L L+E++
Sbjct: 1   MNGLSFSEICCLFCCPPCPSKIAAKLAFLPPEPTYSLQDLSEGGQ-ALHLSEKS 53



 Score = 31.9 bits (69), Expect = 0.37
 Identities = 13/16 (81%), Positives = 14/16 (87%)
 Frame = +2

Query: 509 KXLYADIDAAWQALRT 556
           K LY+DIDAAW ALRT
Sbjct: 139 KNLYSDIDAAWNALRT 154


>SB_1646| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 534

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 3/96 (3%)
 Frame = -2

Query: 380 EQYSETSIWTATNKETGYLVAPRRSGVEAFDVFFFTF*VLPLA---RSVSVKENFDPVSS 210
           +++S T + + T+ E   +V PR+ G++A      +  ++      +S SV+EN  P+  
Sbjct: 301 DKHSGTLLPSFTSLEKHNIVTPRQRGIQANKFHLRSRYMIDQTFTQQSDSVEENCSPLRQ 360

Query: 209 GVNAYVGSGGRNANLAAIFPGHGGQQNRQQSSLKLN 102
            V   VGS G +            Q +R    + LN
Sbjct: 361 KVREIVGSKGTSVETLPENTSSSPQDDRSNDQVFLN 396


>SB_41191| Best HMM Match : PadR (HMM E-Value=8.6)
          Length = 276

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
 Frame = -2

Query: 380 EQYSETSIWTATNKETGYLVAPRRSGVEAFDVFFFTF*VLPLA---RSVSVKENFDPVSS 210
           +++S T + + T+ E   +V PR+ G++A      +  ++      +S SV+EN  P+  
Sbjct: 92  DKHSGTLLPSFTSLEKHNIVTPRQRGIQANKFHLRSRYMIDQTFTQQSDSVEENCSPLRQ 151

Query: 209 GVNAYVGSGGRNAN 168
            V   VGS G   N
Sbjct: 152 KVREIVGSKGTQIN 165


>SB_59414| Best HMM Match : Complex1_LYR (HMM E-Value=7.7)
          Length = 350

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +1

Query: 181 PPEPTYAFTPDETGSKFSLTLTERASGNTQNVKKKTSKASTPERRGATR 327
           P +P   + P+E  SK S+ L  +     +N   K  K     R+G TR
Sbjct: 205 PEDPNDMYLPNEAWSKTSMELFNQLKREAENSNGKWVKLKLKPRQGDTR 253


>SB_48834| Best HMM Match : PH (HMM E-Value=3.3e-05)
          Length = 329

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +1

Query: 232 SLTLTERASGNTQNVKKKTSKASTPERRG 318
           SL++ E  +G    VK+KTSK  T ++RG
Sbjct: 134 SLSVEEPTAGRRTFVKRKTSKIGTKKKRG 162


>SB_45326| Best HMM Match : Ank (HMM E-Value=5.2)
          Length = 309

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -2

Query: 371 SETSIWTATNK-ETGYLVAPRRSGVEAFDV 285
           SE S+W A  + +TGYL   R  G   FDV
Sbjct: 2   SELSMWEAARRGDTGYLKRCRELGARNFDV 31


>SB_43238| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2532

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +3

Query: 363  RFTILFSHGNAVDLG-QMSSFYLGLGTRI 446
            R T + SHGN VDLG Q  S  L L T++
Sbjct: 2298 RLTSIHSHGNIVDLGAQRISDGLALNTKV 2326


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,449,149
Number of Sequences: 59808
Number of extensions: 275292
Number of successful extensions: 531
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 531
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)