Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060544.seq
         (558 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75712-10|CAB00039.2|  332|Caenorhabditis elegans Hypothetical p...    89   3e-18
Z95559-9|CAI46625.1|  510|Caenorhabditis elegans Hypothetical pr...    40   0.002
Z81061-3|CAB02933.1|  232|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z70308-1|CAA94351.1|  213|Caenorhabditis elegans Hypothetical pr...    28   5.2  
AF003135-11|AAK18987.2| 1406|Caenorhabditis elegans Hypothetical...    28   5.2  
AC006834-5|AAF40007.1|  451|Caenorhabditis elegans Hypothetical ...    28   5.2  

>Z75712-10|CAB00039.2|  332|Caenorhabditis elegans Hypothetical
           protein K04G2.2 protein.
          Length = 332

 Score = 88.6 bits (210), Expect = 3e-18
 Identities = 41/86 (47%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
 Frame = +3

Query: 258 WQYSEREKEN-IEGFYSRTXRGNKIACLFVRCSPNARFTILFSHGNAVDLGQMSSFYLGL 434
           W + E +  N +E   +RT R N++AC  +R  PN+ FT+LFSHGNAVDLGQM+SF  GL
Sbjct: 76  WPHQEVDMANCVEMRITRTRRRNRVACTMIRPLPNSHFTLLFSHGNAVDLGQMTSFLYGL 135

Query: 435 GTRINCNIFXXXXXXXXXXXXKPSER 512
           G  +NCN+F            KPSE+
Sbjct: 136 GFHLNCNVFSYDYSGYGCSTGKPSEK 161



 Score = 32.3 bits (70), Expect = 0.24
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +1

Query: 157 IAAKLAFLPPEPTYAFTPD 213
           I +KLAF+PPEP+Y  T D
Sbjct: 46  IVSKLAFMPPEPSYTITED 64


>Z95559-9|CAI46625.1|  510|Caenorhabditis elegans Hypothetical
           protein Y41E3.18 protein.
          Length = 510

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +3

Query: 288 IEGFYSRTXRGNKIACLFVRCSPN--ARFTILFSHGNAVDL 404
           + GF  +T   NKI C++V C      RFT+L+SH N  DL
Sbjct: 241 VRGFVLKTKNKNKIGCVYVGCPDGFAPRFTLLYSHPNGSDL 281


>Z81061-3|CAB02933.1|  232|Caenorhabditis elegans Hypothetical
           protein F14H8.4 protein.
          Length = 232

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +3

Query: 108 FQRTLLPVLLSAMPRKNCGQVSISASRTNVCI 203
           F RT  PVL +A+P+ N   + I+AS T+  I
Sbjct: 187 FHRTFCPVLTNAIPKPNAPPMRIAASPTSAQI 218


>Z70308-1|CAA94351.1|  213|Caenorhabditis elegans Hypothetical
           protein F49E11.4 protein.
          Length = 213

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -1

Query: 162 RNFSWAWRTTKQATKFAET*SVHFVSVLFVNTSIY 58
           R  SW+ + T  ATKFAET   +   V+    SI+
Sbjct: 58  RKISWSKKLTNAATKFAETCPKNHSVVMNTGESIF 92


>AF003135-11|AAK18987.2| 1406|Caenorhabditis elegans Hypothetical
           protein W03F11.4 protein.
          Length = 1406

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +1

Query: 181 PPEPTYAFTPDETGSKFSLTLTERASGNTQNVKKKTSKASTPERRGA 321
           PP P     P    S  SLT    A+ N  ++   T++AS  E  G+
Sbjct: 828 PPPPNPPPAPQPPSSAASLTPAPSAAQNAPSIAPSTTEASEEESSGS 874


>AC006834-5|AAF40007.1|  451|Caenorhabditis elegans Hypothetical
           protein ZK973.3 protein.
          Length = 451

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 173 ANLAAIFPGHGGQQNRQQSSLKLNPFI 93
           A L  +F GHGGQQ  +  S  L P++
Sbjct: 67  AFLFGVFDGHGGQQCSRHISTNLYPYL 93


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,456,180
Number of Sequences: 27780
Number of extensions: 213117
Number of successful extensions: 556
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)