Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060541.seq
         (680 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S...    85   1e-17
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    30   0.36 
SPAC57A7.10c |sec21||coatomer gamma subunit Sec21 |Schizosacchar...    26   5.8  
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    25   7.7  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    25   7.7  

>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1206

 Score = 84.6 bits (200), Expect = 1e-17
 Identities = 39/86 (45%), Positives = 54/86 (62%)
 Frame = +3

Query: 252  FLNGASQKGDVVVNFHVGETVTSLQRATLIPGGSEALLYATISGSLGVLLPFTSREDHDF 431
            FLN    K D++ +F   +  TSLQ+  L+ G  E LL+  + G++GV  PF ++ED  F
Sbjct: 1071 FLNSTPHKLDLMAHFFTNDIPTSLQKVQLVEGAREVLLWTGLLGTVGVFTPFINQEDVRF 1130

Query: 432  FQHLEMHMRSENSPLCGRDHLSFRSY 509
            FQ LE  +R E  PL GRDHL++RSY
Sbjct: 1131 FQQLEFLLRKECPPLAGRDHLAYRSY 1156



 Score = 80.6 bits (190), Expect = 2e-16
 Identities = 40/97 (41%), Positives = 61/97 (62%), Gaps = 1/97 (1%)
 Frame = +1

Query: 10   IFVSDVQESVFCVKHKKRENQLIIFADDTNPRWITNSCILDYDTIAVSDKFGNVAIMRLP 189
            I V+D Q SV  V +K  +N L+ FADDT  RW T + ++DYDT+A  DKFGN+ ++R P
Sbjct: 990  IVVADSQYSVRFVVYKPEDNHLLTFADDTIHRWTTTNVLVDYDTLAGGDKFGNIWLLRCP 1049

Query: 190  QSVSDDVDEDPTGNKALWDRGFL-MVLHKREMLWSIF 297
            + VS   DE+ + +K + ++ FL    HK +++   F
Sbjct: 1050 EHVSKLADEENSESKLIHEKPFLNSTPHKLDLMAHFF 1086



 Score = 51.6 bits (118), Expect = 1e-07
 Identities = 26/41 (63%), Positives = 30/41 (73%)
 Frame = +2

Query: 509  YYPVKNVIDGDLCEQFNSLDPGKQKAIAXDLERTPAEVSKK 631
            Y PVK VIDGDLCE + SL    Q+ IA +L+RT AEVSKK
Sbjct: 1157 YAPVKCVIDGDLCEMYYSLPHPVQEMIANELDRTIAEVSKK 1197


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 21/70 (30%), Positives = 38/70 (54%)
 Frame = +1

Query: 7    EIFVSDVQESVFCVKHKKRENQLIIFADDTNPRWITNSCILDYDTIAVSDKFGNVAIMRL 186
            EI  +D+ +S+  ++    ++QLI  A D +P W T+  IL      V++  GN A++ L
Sbjct: 861  EIIAADLMKSITVLQFI--DDQLIEVARDYHPLWATSVEILSERKYFVTEADGN-AVILL 917

Query: 187  PQSVSDDVDE 216
              +VS  + +
Sbjct: 918  RDNVSPQLSD 927


>SPAC57A7.10c |sec21||coatomer gamma subunit Sec21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -3

Query: 183 PHYSHITKFVRYCYSVIIKNTAICYPSRIGIISK 82
           P  S  T+F+RY Y+ I+   AI   + +  ++K
Sbjct: 484 PKASEPTRFIRYIYNRIMLENAIVRSAAVSALTK 517


>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 282 HLPFVKHH*ETSVPKCFVSSRIFINIITY 196
           +L F+KH     VP CF S +I +  + +
Sbjct: 815 NLDFIKHISMPCVPACFNSQQILVTFLKF 843


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -1

Query: 311 SFTNMKIDHNISLL*STIKKPLSQSALFPVGSSSTSS 201
           +FT+   +    L  S++  PLS S+ +P   SST S
Sbjct: 712 TFTSSGFNTTSGLPTSSVSTPLSNSSAYPSSGSSTFS 748


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,799,314
Number of Sequences: 5004
Number of extensions: 57913
Number of successful extensions: 140
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)