Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060541.seq
         (680 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198...   125   3e-29
07_01_0736 - 5600201-5600374,5600455-5600563,5601075-5601196,560...    35   0.069
07_01_1104 - 10160493-10160599,10160632-10160637,10160930-101609...    29   3.4  
02_04_0480 - 23274945-23275196,23275558-23275623,23276709-232768...    28   7.9  

>02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,
            1982950-1983087
          Length = 1228

 Score =  125 bits (302), Expect = 3e-29
 Identities = 54/84 (64%), Positives = 67/84 (79%)
 Frame = +3

Query: 255  LNGASQKGDVVVNFHVGETVTSLQRATLIPGGSEALLYATISGSLGVLLPFTSREDHDFF 434
            LNGA  K + +V FHVG+ VT LQ+A+LIPGG E L+Y T+ GS+G LL FTSRED DFF
Sbjct: 1094 LNGAPNKVEEIVQFHVGDVVTCLQKASLIPGGGECLIYGTVMGSVGALLAFTSREDVDFF 1153

Query: 435  QHLEMHMRSENSPLCGRDHLSFRS 506
             HLEMH+R E+ PLCGRDH+++RS
Sbjct: 1154 SHLEMHLRQEHPPLCGRDHMAYRS 1177



 Score =  105 bits (251), Expect = 4e-23
 Identities = 45/86 (52%), Positives = 64/86 (74%)
 Frame = +1

Query: 1    RHEIFVSDVQESVFCVKHKKRENQLIIFADDTNPRWITNSCILDYDTIAVSDKFGNVAIM 180
            R  I+V D+QES    K+++ ENQL IFADD+ PRW+T +  +D+DT+A +DKFGN+   
Sbjct: 1009 RDRIYVGDMQESFHYCKYRRDENQLYIFADDSVPRWLTAANHIDFDTMAGADKFGNIYFA 1068

Query: 181  RLPQSVSDDVDEDPTGNKALWDRGFL 258
            RLPQ +SD+++EDPTG K  W++G L
Sbjct: 1069 RLPQDLSDEIEEDPTGGKIKWEQGKL 1094



 Score = 59.7 bits (138), Expect = 2e-09
 Identities = 26/41 (63%), Positives = 32/41 (78%)
 Frame = +2

Query: 509  YYPVKNVIDGDLCEQFNSLDPGKQKAIAXDLERTPAEVSKK 631
            Y+PVK+VIDGDLCEQF SL    Q+ IA +L+RTP E+ KK
Sbjct: 1179 YFPVKDVIDGDLCEQFPSLPADMQRKIADELDRTPGEILKK 1219


>07_01_0736 - 5600201-5600374,5600455-5600563,5601075-5601196,
            5602859-5602935,5603349-5603487,5604306-5604618,
            5605084-5605394,5607245-5609141,5609239-5609374,
            5609519-5609607,5610424-5610507,5611112-5611191,
            5611312-5611446,5612340-5612585
          Length = 1303

 Score = 34.7 bits (76), Expect = 0.069
 Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
 Frame = +3

Query: 369  ATISGSLGVLLPFTSREDHDFFQHLE--MHMRSENSPLCGRDHLSFR 503
            +T+ GS+ V++P TS E+H   Q ++  + +    +PL G DH  FR
Sbjct: 1196 STLLGSIFVMIPLTS-EEHQMLQDVQERLSVHPLTAPLLGNDHAEFR 1241


>07_01_1104 -
           10160493-10160599,10160632-10160637,10160930-10160975,
           10161053-10161190,10161275-10161679,10163193-10163330,
           10163401-10163482,10163596-10163943,10164294-10164655,
           10165154-10165209,10166428-10166558,10166564-10166628,
           10169191-10169631
          Length = 774

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +1

Query: 43  CVKHKKRENQLIIFADDTNPRWITNSCILDYDTIAV-SDKFGNVAIMRLPQSVSDDVDED 219
           CV   + +N++   AD TN RW     ILD+  +++  DK   +  M+ P    D V   
Sbjct: 700 CVPKLQLKNKIWEIADFTNNRWQVKKDILDWCGLSLPPDKDRGIQQMQ-PDESGDSVQPS 758

Query: 220 P 222
           P
Sbjct: 759 P 759


>02_04_0480 -
           23274945-23275196,23275558-23275623,23276709-23276851,
           23276947-23277063,23277219-23278683,23279561-23280730
          Length = 1070

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = +1

Query: 31  ESVFCVKHKKRENQLIIFADD 93
           +SVFC++ K R +++II +D+
Sbjct: 587 DSVFCIQEKTRRSEVIIISDE 607


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,020,639
Number of Sequences: 37544
Number of extensions: 339306
Number of successful extensions: 700
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)