Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060541.seq
         (680 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11717| Best HMM Match : No HMM Matches (HMM E-Value=.)              70   2e-12
SB_57383| Best HMM Match : No HMM Matches (HMM E-Value=.)              57   2e-08
SB_46407| Best HMM Match : CPSF_A (HMM E-Value=3.8e-11)                48   7e-06
SB_30503| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_11187| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-10)          29   4.6  

>SB_11717| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 173

 Score = 70.1 bits (164), Expect = 2e-12
 Identities = 30/47 (63%), Positives = 41/47 (87%)
 Frame = +3

Query: 279 DVVVNFHVGETVTSLQRATLIPGGSEALLYATISGSLGVLLPFTSRE 419
           + + N+ VGETV SLQ+ATLIPGGSE+L++ T+SG +G+L+PFTSRE
Sbjct: 127 ETMCNYFVGETVLSLQKATLIPGGSESLVFTTLSGGVGMLVPFTSRE 173



 Score = 50.8 bits (116), Expect(2) = 2e-12
 Identities = 24/36 (66%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
 Frame = +1

Query: 178 MRLPQSVSDDVDEDPTGNKALWDRGFLM-VLHKREM 282
           +RLP   SDDVDEDPTG KA WDRG L     KREM
Sbjct: 56  VRLPSGSSDDVDEDPTGTKAFWDRGLLNGAQQKREM 91



 Score = 38.7 bits (86), Expect(2) = 2e-12
 Identities = 14/22 (63%), Positives = 18/22 (81%)
 Frame = +1

Query: 106 WITNSCILDYDTIAVSDKFGNV 171
           W+T  C LDYDT+A +DKFGN+
Sbjct: 2   WLTCCCYLDYDTLAGADKFGNI 23


>SB_57383| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 24/36 (66%), Positives = 31/36 (86%)
 Frame = +2

Query: 524 NVIDGDLCEQFNSLDPGKQKAIAXDLERTPAEVSKK 631
           +V+DGDLCE +NSLD  K++ IA +L+RTPAEVSKK
Sbjct: 1   SVVDGDLCEHYNSLDYSKRRTIAEELDRTPAEVSKK 36



 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/16 (75%), Positives = 13/16 (81%)
 Frame = +3

Query: 612 PPKYQKKLEDIRTRYA 659
           P +  KKLEDIRTRYA
Sbjct: 30  PAEVSKKLEDIRTRYA 45


>SB_46407| Best HMM Match : CPSF_A (HMM E-Value=3.8e-11)
          Length = 242

 Score = 48.0 bits (109), Expect = 7e-06
 Identities = 20/33 (60%), Positives = 26/33 (78%)
 Frame = +1

Query: 10  IFVSDVQESVFCVKHKKRENQLIIFADDTNPRW 108
           I VSD+QES   VK+K R+NQL++FADD NP +
Sbjct: 164 IVVSDIQESFHFVKYKPRDNQLVVFADDVNPSY 196


>SB_30503| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1402

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = -3

Query: 246  VPKCFVSSRIFINIITYRLW*PHYSHITKFVRYCYSVIIKNTAIC 112
            +P+C    +IF N I YR     Y +  K  +YCY  II  +A C
Sbjct: 1337 LPRC---GKIFYNPIKYRCARNKYIYNPKTHKYCYGRIISISAHC 1378


>SB_11187| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-10)
          Length = 1163

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/62 (25%), Positives = 28/62 (45%)
 Frame = +3

Query: 267  SQKGDVVVNFHVGETVTSLQRATLIPGGSEALLYATISGSLGVLLPFTSREDHDFFQHLE 446
            S +  ++        +T+  +++LI   S++LL  T S SL +         HDFF  + 
Sbjct: 857  SSQSSLITTSSQSSLITTSSQSSLITTSSQSLLITTSSQSLLITTSSQVITHHDFFSIIT 916

Query: 447  MH 452
             H
Sbjct: 917  HH 918


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,395,416
Number of Sequences: 59808
Number of extensions: 422174
Number of successful extensions: 860
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)