Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060541.seq
         (680 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF043699-3|AAB97566.1| 1220|Caenorhabditis elegans Temporarily a...   129   2e-30
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch...    28   5.4  
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch...    28   5.4  
Z81077-17|CAB82212.1| 2944|Caenorhabditis elegans Hypothetical p...    28   7.1  
Z75952-7|CAB82204.1| 2944|Caenorhabditis elegans Hypothetical pr...    28   7.1  
U97000-5|AAC47991.1|  393|Caenorhabditis elegans Aspartyl protea...    28   7.1  
U34889-1|AAB06576.1|  388|Caenorhabditis elegans aspartic protea...    28   7.1  
Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical pr...    27   9.4  
AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical...    27   9.4  

>AF043699-3|AAB97566.1| 1220|Caenorhabditis elegans Temporarily
            assigned gene nameprotein 203 protein.
          Length = 1220

 Score =  129 bits (311), Expect = 2e-30
 Identities = 64/143 (44%), Positives = 93/143 (65%)
 Frame = +3

Query: 231  QSTLGQRFLNGASQKGDVVVNFHVGETVTSLQRATLIPGGSEALLYATISGSLGVLLPFT 410
            +S   + +LNGASQK ++V NF +G+T+TSLQ+ +L+PG +EAL+Y TI G++G L+ F 
Sbjct: 1077 KSVWDRGWLNGASQKVELVSNFFIGDTITSLQKTSLMPGANEALVYTTIGGAIGCLVSFM 1136

Query: 411  SREDHDFFQHLEMHMRSENSPLCGRDHLSFRSYTTQ*RM*LTEIYVNSLTP*TLENKKPS 590
            S+++ DFF +LEMH+RSE  PLCGRDHL++RSY    +  +        +    + +K  
Sbjct: 1137 SKDEVDFFTNLEMHVRSEYPPLCGRDHLAYRSYYAPCKSVIDGDICEQFSLMDTQKQKDV 1196

Query: 591  XVIWNVLPPKYQKKLEDIRTRYA 659
                     +  KKLEDIRTRYA
Sbjct: 1197 AEELGKTVSEISKKLEDIRTRYA 1219



 Score =  118 bits (285), Expect = 3e-27
 Identities = 51/98 (52%), Positives = 77/98 (78%)
 Frame = +1

Query: 10   IFVSDVQESVFCVKHKKRENQLIIFADDTNPRWITNSCILDYDTIAVSDKFGNVAIMRLP 189
            I VSD QESV  ++++K +NQL++FADDT PR++T  C+LDY T+AV+DKFGN+A++RLP
Sbjct: 1003 IIVSDSQESVHFLRYRKGDNQLVVFADDTTPRYVTCVCVLDYHTVAVADKFGNLAVVRLP 1062

Query: 190  QSVSDDVDEDPTGNKALWDRGFLMVLHKREMLWSIFML 303
            + V++DV +DPT +K++WDRG+L    ++  L S F +
Sbjct: 1063 ERVNEDVQDDPTVSKSVWDRGWLNGASQKVELVSNFFI 1100


>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
            protein 1 protein.
          Length = 4568

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +1

Query: 10   IFVSDVQESVFCVKHKKRENQLIIFADDTNPRWITN-SCILD 132
            +F S +++ +  V+ +    Q IIF  D +P W+ N + +LD
Sbjct: 2218 LFTSVIRKIIDNVRGEADRRQWIIFDGDVDPEWVENLNSVLD 2259


>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
            protein.
          Length = 4568

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +1

Query: 10   IFVSDVQESVFCVKHKKRENQLIIFADDTNPRWITN-SCILD 132
            +F S +++ +  V+ +    Q IIF  D +P W+ N + +LD
Sbjct: 2218 LFTSVIRKIIDNVRGEADRRQWIIFDGDVDPEWVENLNSVLD 2259


>Z81077-17|CAB82212.1| 2944|Caenorhabditis elegans Hypothetical
           protein F36A2.13 protein.
          Length = 2944

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +3

Query: 288 VNFHVGETVTSLQRATLIPGGSEALLYATISGSLGVLL-PFTSREDHDFFQHL 443
           + F VG+ V  +++A L P GS A    T +  +GVLL    S  DH  F+ +
Sbjct: 530 IEFFVGQQV-QMKKAPLYPAGSVAAQIDTSNPMIGVLLEDCWSATDHCRFRSM 581


>Z75952-7|CAB82204.1| 2944|Caenorhabditis elegans Hypothetical
           protein F36A2.13 protein.
          Length = 2944

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +3

Query: 288 VNFHVGETVTSLQRATLIPGGSEALLYATISGSLGVLL-PFTSREDHDFFQHL 443
           + F VG+ V  +++A L P GS A    T +  +GVLL    S  DH  F+ +
Sbjct: 530 IEFFVGQQV-QMKKAPLYPAGSVAAQIDTSNPMIGVLLEDCWSATDHCRFRSM 581


>U97000-5|AAC47991.1|  393|Caenorhabditis elegans Aspartyl protease
           protein 5 protein.
          Length = 393

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -1

Query: 317 GYSFTNMKIDHNISLL*STIKKPLSQSALFPVGSSSTSSLTDCGNRI 177
           G +FT++ +DH +  L + I + L    LF V      S  D G  +
Sbjct: 184 GLAFTSLAVDHVVPPLINAINQGLLDQPLFTVWLEHKGSANDVGGGV 230


>U34889-1|AAB06576.1|  388|Caenorhabditis elegans aspartic protease
           protein.
          Length = 388

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -1

Query: 317 GYSFTNMKIDHNISLL*STIKKPLSQSALFPVGSSSTSSLTDCGNRI 177
           G +FT++ +DH +  L + I + L    LF V      S  D G  +
Sbjct: 179 GLAFTSLAVDHVVPPLINAINQGLLDQPLFTVWLEHKGSANDVGGGV 225


>Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical protein
            F15D4.7 protein.
          Length = 2268

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +2

Query: 155  TNLVMWL*CGYHNL*VMMLMKILLETKHFG 244
            T+++ W  C +H+  +++  K L+ET  FG
Sbjct: 974  TDIIPWFKCSHHSNQIILPSKRLIETTPFG 1003


>AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical
            protein F15D4.7 protein.
          Length = 2268

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +2

Query: 155  TNLVMWL*CGYHNL*VMMLMKILLETKHFG 244
            T+++ W  C +H+  +++  K L+ET  FG
Sbjct: 974  TDIIPWFKCSHHSNQIILPSKRLIETTPFG 1003


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,384,825
Number of Sequences: 27780
Number of extensions: 322477
Number of successful extensions: 708
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)