Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060539.seq
(686 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0992 + 25083397-25083537,25084198-25084228,25084971-250851... 44 2e-04
06_01_0579 + 4099039-4099086,4099798-4099848,4100151-4100286,410... 43 3e-04
03_05_0383 + 23656041-23656096,23657189-23657255,23657599-236577... 37 0.013
10_08_0847 + 21006842-21007042,21007173-21007261,21012226-210124... 33 0.28
03_02_0490 - 8840577-8840914,8841009-8841067,8841168-8841283,884... 33 0.28
02_05_0967 - 33148283-33148524,33148602-33148881,33148959-331491... 32 0.37
06_01_0926 - 7139220-7139318,7139394-7139478,7139573-7139643,713... 31 0.65
12_02_0498 + 19721038-19721178,19721376-19721472,19721576-197216... 31 1.1
08_02_0739 + 20584264-20584626,20586943-20587011,20587696-205880... 31 1.1
04_01_0370 + 4861754-4862222,4862227-4862372 29 2.6
11_06_0311 - 22279202-22279690,22279976-22280103,22281249-222813... 29 3.5
10_08_0547 - 18682357-18682683,18682971-18683060,18683279-186833... 29 3.5
08_02_1421 - 26961716-26963650,26967316-26967942,26969832-26970887 29 3.5
10_08_0772 + 20471748-20473004 29 4.6
10_08_0190 + 15607241-15607409,15607932-15607990,15608883-156089... 28 6.0
10_08_0771 + 20463872-20465113 28 8.0
09_04_0512 + 18226981-18227143,18227648-18229555,18229649-182302... 28 8.0
09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,353... 28 8.0
>12_02_0992 +
25083397-25083537,25084198-25084228,25084971-25085139,
25085228-25085291,25085408-25085474,25086543-25086586,
25086835-25086922,25087079-25087238,25087659-25087779,
25087859-25087942,25088043-25088162,25088689-25088901,
25088995-25089054,25089144-25089262,25089407-25089465,
25089585-25089919
Length = 624
Score = 43.6 bits (98), Expect = 2e-04
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Frame = +3
Query: 318 CAKCGEFV-IGRVIKAMNSNWHPACFRCEECNVELADAGFIKHAGRAL---CHVCNARIK 485
CA C + GR + M+S WHP CFRC CN +++ F H + C+ K
Sbjct: 257 CAGCKNPIGHGRFLSCMDSVWHPQCFRCFACNKPISEYEFAMHEDQPYHKSCYKDFFHPK 316
Query: 486 ADGLQNYI 509
D +N+I
Sbjct: 317 CDVCKNFI 324
>06_01_0579 +
4099039-4099086,4099798-4099848,4100151-4100286,
4100287-4100401,4100496-4100528,4101037-4101166,
4101663-4101751,4102042-4102148,4102238-4102309,
4102384-4102764,4104907-4105064,4105581-4105674,
4106082-4106089,4106297-4106387,4107136-4107289,
4108257-4108377,4108468-4108551,4108946-4109065,
4109181-4109393,4109482-4109544,4109668-4109783,
4110132-4110190,4111126-4111445
Length = 920
Score = 42.7 bits (96), Expect = 3e-04
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +3
Query: 318 CAKC-GEFVIGRVIKAMNSNWHPACFRCEECNVELADAGF 434
CA C E GR + M + WHP CFRC CN + D F
Sbjct: 558 CAGCHSEIGHGRFLSCMGAVWHPECFRCHACNQPIYDYEF 597
>03_05_0383 +
23656041-23656096,23657189-23657255,23657599-23657745,
23658094-23658178,23658380-23658551,23660056-23660176,
23660431-23660550,23660861-23661073,23661154-23661213,
23661306-23661424,23661609-23661667,23661798-23662132
Length = 517
Score = 37.1 bits (82), Expect = 0.013
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +3
Query: 318 CAKCGEFV-IGRVIKAMNSNWHPACFRCEECNVELAD 425
CA C + GR + M+S WHP CFRC C+ +++
Sbjct: 178 CAGCKTPIGQGRFLSCMDSVWHPQCFRCFACDRPISE 214
>10_08_0847 +
21006842-21007042,21007173-21007261,21012226-21012429,
21016334-21016568,21016760-21016952,21017472-21017503,
21019172-21019236,21020766-21020985,21021172-21021370,
21021728-21021768,21023366-21023404,21023699-21023734,
21023767-21023798,21024264-21024426,21024602-21024653,
21024699-21024794,21024911-21025023,21026536-21026615,
21027343-21027577,21027765-21027890,21027994-21028092
Length = 849
Score = 32.7 bits (71), Expect = 0.28
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Frame = +3
Query: 255 FYEFEGRKYCEQD--FQVLFAPCCAKCGEFVIGRVIKAMNSNWHPACFRCEECNVELADA 428
F E +G + +D + FA C C E + + N + CF C++C VEL
Sbjct: 589 FVELKGSSFFHEDGTTTLFFAETCPCCKEDSGIYLCCPLEENDNGKCFGCQKCGVELRHP 648
Query: 429 GFIKHAG--RALC 461
F + G R +C
Sbjct: 649 TFADYFGGHRDIC 661
>03_02_0490 -
8840577-8840914,8841009-8841067,8841168-8841283,
8841578-8841640,8841826-8842038,8842211-8842330,
8842453-8842578,8842593-8842749,8842830-8842962,
8843054-8843138,8843305-8843421
Length = 508
Score = 32.7 bits (71), Expect = 0.28
Identities = 12/31 (38%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Frame = +3
Query: 318 CAKCG-EFVIGRVIKAMNSNWHPACFRCEEC 407
C C E G + + WHP CFRC C
Sbjct: 114 CGGCKHEIGHGHYLSCLGMYWHPQCFRCSSC 144
>02_05_0967 -
33148283-33148524,33148602-33148881,33148959-33149151,
33149244-33149324,33149395-33149520,33149758-33150137,
33150367-33150394,33150816-33150979,33151920-33152039,
33152168-33152416
Length = 620
Score = 32.3 bits (70), Expect = 0.37
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Frame = +1
Query: 22 IKVFLVDNKS*NNLIKTRFFSLPNASLFLATMSLDNMYCTRCGDGFEPNEKIVNS--NGE 195
+++ V N + + KT F + P+A +FL +L +C R + ++V S + E
Sbjct: 443 LQIIDVRNSNLIEVNKTEFMT-PSAFIFLYENNLFLTFCNRTVAAWNFRGELVTSFDDHE 501
Query: 196 LWHTNC 213
LWH+NC
Sbjct: 502 LWHSNC 507
>06_01_0926 -
7139220-7139318,7139394-7139478,7139573-7139643,
7139996-7140076,7140805-7140895,7141242-7141330,
7141749-7141802,7141906-7142085,7142175-7142237,
7142575-7142705,7142807-7142900,7143343-7143684,
7143957-7144348,7145010-7148487,7149101-7149187,
7149324-7149367,7149495-7149591,7150429-7150572
Length = 1873
Score = 31.5 bits (68), Expect = 0.65
Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +3
Query: 318 CAKCGEFVIG-RVIKAMNSNWHPACFRCEECNVELADAGFIKHAGRALCHVCNARI 482
C C + V + S++H +CFRC L+ + + H G+ C ++++
Sbjct: 112 CVVCNKTVYPLEKVNLNGSSYHKSCFRCTHGGCTLSPSNNVTHEGKLYCKTHHSQL 167
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +1
Query: 136 CTRCGDGFEPNEKIVNSNGELWHTNCFVC 222
C C P EK VN NG +H +CF C
Sbjct: 112 CVVCNKTVYPLEK-VNLNGSSYHKSCFRC 139
>12_02_0498 +
19721038-19721178,19721376-19721472,19721576-19721619,
19722120-19722203,19722441-19722662
Length = 195
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +3
Query: 318 CAKCGEFV--IGRVIKAMNSNWHPACFRCEECNVELADAGFIKHAGRALC 461
C C + V I RV N+ +H +CF+C ++ + +I H G+ C
Sbjct: 110 CVGCNKTVYPIERVT-VNNTMYHKSCFKCCHGGCTISPSNYIAHEGKLYC 158
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Frame = +3
Query: 318 CAKCGEFV-IGRVIKAMNSNWHPACFRCEECNVELADAGFIKHAGRALC 461
C C + V + + A N +H ACFRC C L A + G C
Sbjct: 12 CMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLANYNSFEGVLYC 60
>08_02_0739 +
20584264-20584626,20586943-20587011,20587696-20588006,
20588447-20588648,20588887-20588958
Length = 338
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = -1
Query: 467 YMAQCSTSMLDKTGICKLYITLFTSEAGRMPIRVHRLYNAANHKLSTLCTAWCK*N 300
YM +C+ L G+ K+ L+ + IR+H + H L + +A CK N
Sbjct: 146 YMPRCTG--LTAEGVVKIVQVLYECKGNLNRIRLHGICRMTKHHLDAISSAMCKGN 199
>04_01_0370 + 4861754-4862222,4862227-4862372
Length = 204
Score = 29.5 bits (63), Expect = 2.6
Identities = 29/110 (26%), Positives = 44/110 (40%), Gaps = 5/110 (4%)
Frame = -1
Query: 620 YDPAQLPQVATGKVIAHGKLLP-DNVKVLRQLLHGTYDNVVLQPIRFDTRVTYMAQCSTS 444
Y P P VA I G L+P D+ +L ++ G V + P+ F ST
Sbjct: 83 YHPFNPPHVAISDTIIAGYLIPKDSHVMLSRIGLGRNPRVWVNPLEFRPERHLNNATSTM 142
Query: 443 MLDKTGICKLYITLFTSEAGRMPIRVHRLYNAANHKLSTLC----TAWCK 306
+L + + +++ A + H YN A K ST T WC+
Sbjct: 143 VLAEPEL--RFVSFGAGVAALCRVTWHFNYNDAIRKASTRVHLEHTPWCR 190
>11_06_0311 -
22279202-22279690,22279976-22280103,22281249-22281355,
22282799-22282888,22283590-22283660
Length = 294
Score = 29.1 bits (62), Expect = 3.5
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = -2
Query: 469 HTWHNARPACLIKPASASSTLHSSHRKQAG 380
H W N ++ P + S LH+ H + AG
Sbjct: 193 HIWGNGPNLAMVHPTNTLSPLHNQHHQSAG 222
>10_08_0547 -
18682357-18682683,18682971-18683060,18683279-18683301,
18683397-18683496,18683615-18683749
Length = 224
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +1
Query: 136 CTRCGDGFEPNEKIVNSNGELWHTNCFVCA 225
CT C P EK+ GE +H CF CA
Sbjct: 104 CTACKKTVYPLEKMT-MEGECYHRTCFKCA 132
>08_02_1421 - 26961716-26963650,26967316-26967942,26969832-26970887
Length = 1205
Score = 29.1 bits (62), Expect = 3.5
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = -1
Query: 188 LEFTIFSFGSNPSPQRVQYILSRDIVAKNNDALGKLKNLVFIRLF*LLLSTKNTFIK 18
L T S ++P P+ +Q + + + K +GKL+NLV +RL L + IK
Sbjct: 1013 LHGTSSSSSTSPPPENLQSLKLQGALGKLPQWIGKLQNLVKLRLMWTELEDADAAIK 1069
>10_08_0772 + 20471748-20473004
Length = 418
Score = 28.7 bits (61), Expect = 4.6
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 160 EPNEKIVNSNGELWHTNCFVCAQCFR 237
+P I++ GEL T C +C++CF+
Sbjct: 78 QPASAIIDVAGELVWTQCSMCSRCFK 103
>10_08_0190 +
15607241-15607409,15607932-15607990,15608883-15608991,
15609394-15609551,15609976-15610044,15610158-15610847,
15611112-15611629,15611725-15611789,15613010-15613089,
15613894-15613998,15614768-15614881,15615029-15615168,
15615257-15615385,15615903-15616055,15616186-15616327
Length = 899
Score = 28.3 bits (60), Expect = 6.0
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = +1
Query: 136 CTRCGDGFEPNEKIVNSNGELWHTNCFVCAQCFRMFP 246
C R GF+ N+++V+ NG +W + + + + P
Sbjct: 595 CDRDHGGFDCNDELVSPNGHIWQSVFLIASNGAAILP 631
>10_08_0771 + 20463872-20465113
Length = 413
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 160 EPNEKIVNSNGELWHTNCFVCAQCFR 237
+P IV+ GEL T C C +CF+
Sbjct: 73 QPASAIVDVAGELVWTQCSACRRCFK 98
>09_04_0512 +
18226981-18227143,18227648-18229555,18229649-18230295,
18230710-18231949,18232085-18232419,18232500-18232577,
18232872-18232978,18233020-18233062
Length = 1506
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 295 KSCSQYFRPSNS*KHHQETCESTGHKQNNL 206
KSC++ P KH +TC S H+Q L
Sbjct: 901 KSCAEEENPCLEGKHANDTCSSVVHQQMTL 930
>09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,
3536083-3536226,3536974-3537375,3537499-3537721,
3537830-3542368,3542480-3542599,3543005-3543038,
3543922-3544102,3544198-3544815,3545022-3551098,
3551139-3551304,3551508-3551614,3552056-3552178,
3553417-3553642
Length = 5100
Score = 27.9 bits (59), Expect = 8.0
Identities = 16/69 (23%), Positives = 29/69 (42%)
Frame = +1
Query: 106 LATMSLDNMYCTRCGDGFEPNEKIVNSNGELWHTNCFVCAQCFRMFPDGVSMNLRDESIV 285
L SL+++ C RC I ++ H N + C QC + + + L +E
Sbjct: 3444 LQASSLESLQCPRCSRSVTDKHGICSN----CHENAYQCRQCRNINYENLDSFLCNECGY 3499
Query: 286 NRISKFYLH 312
++ +F H
Sbjct: 3500 SKYGRFEFH 3508
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,932,675
Number of Sequences: 37544
Number of extensions: 447187
Number of successful extensions: 1201
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1201
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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