Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060539.seq
(686 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_34203| Best HMM Match : No HMM Matches (HMM E-Value=.) 74 9e-14
SB_13716| Best HMM Match : LIM (HMM E-Value=0) 68 6e-12
SB_26948| Best HMM Match : LIM (HMM E-Value=2.3e-39) 55 6e-08
SB_20996| Best HMM Match : LIM (HMM E-Value=9e-22) 54 1e-07
SB_38221| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 3e-06
SB_22219| Best HMM Match : LIM (HMM E-Value=8.2e-22) 49 3e-06
SB_9083| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 3e-06
SB_1883| Best HMM Match : LIM (HMM E-Value=2.20004e-42) 48 7e-06
SB_26945| Best HMM Match : PET (HMM E-Value=7.4e-34) 47 1e-05
SB_30367| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 9e-05
SB_2217| Best HMM Match : LIM (HMM E-Value=1.2e-40) 41 0.001
SB_30891| Best HMM Match : LIM (HMM E-Value=4.40008e-43) 40 0.002
SB_26947| Best HMM Match : LIM (HMM E-Value=6.2e-32) 40 0.002
SB_20327| Best HMM Match : LIM (HMM E-Value=4.9e-16) 40 0.002
SB_31712| Best HMM Match : LIM (HMM E-Value=9e-26) 39 0.003
SB_15482| Best HMM Match : LIM (HMM E-Value=0) 39 0.003
SB_20426| Best HMM Match : LIM (HMM E-Value=3e-35) 39 0.004
SB_2694| Best HMM Match : LIM (HMM E-Value=6.6e-14) 37 0.018
SB_40829| Best HMM Match : LIM (HMM E-Value=1.7e-14) 33 0.22
SB_57744| Best HMM Match : LIM (HMM E-Value=4.3e-15) 32 0.38
SB_20358| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.66
SB_29553| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.66
SB_57743| Best HMM Match : LIM (HMM E-Value=1.7e-08) 30 2.0
SB_1021| Best HMM Match : Sec2p (HMM E-Value=1.9) 30 2.0
SB_20707| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_26268| Best HMM Match : TIMP (HMM E-Value=2e-06) 29 3.5
SB_59654| Best HMM Match : LIM (HMM E-Value=0.0026) 28 6.2
SB_58546| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_56863| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 28 8.1
SB_14616| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_12353| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_12523| Best HMM Match : PROCT (HMM E-Value=0) 28 8.1
>SB_34203| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 152
Score = 74.1 bits (174), Expect = 9e-14
Identities = 33/56 (58%), Positives = 39/56 (69%)
Frame = +3
Query: 282 CEQDFQVLFAPCCAKCGEFVIGRVIKAMNSNWHPACFRCEECNVELADAGFIKHAG 449
C +D + A G+FVIGRVIKAM +NWHP CFRCE CN LAD GF+K+AG
Sbjct: 2 CTRDHTLKQAKAYFLMGKFVIGRVIKAMQANWHPDCFRCEICNDCLADTGFVKNAG 57
Score = 33.9 bits (74), Expect = 0.12
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +1
Query: 136 CTRCGDGFEPNEKIVNSNGELWHTNCFVCAQCFRMF 243
C CG E +++V++ G+ WH FVCA+C + F
Sbjct: 81 CFCCGRPVE--DRVVHALGKAWHVEHFVCAKCEKPF 114
Score = 33.1 bits (72), Expect = 0.22
Identities = 15/48 (31%), Positives = 20/48 (41%)
Frame = +3
Query: 318 CAKCGEFVIGRVIKAMNSNWHPACFRCEECNVELADAGFIKHAGRALC 461
C CG V RV+ A+ WH F C +C + + G A C
Sbjct: 81 CFCCGRPVEDRVVHALGKAWHVEHFVCAKCEKPFYGHRYYERKGLAYC 128
Score = 30.3 bits (65), Expect = 1.5
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +3
Query: 255 FYEFEGRKYCEQDFQVLFAPCCAKCGEFVIG 347
+YE +G YCE + L+ C +C + + G
Sbjct: 119 YYERKGLAYCETHYNELYGDICFECNKAITG 149
>SB_13716| Best HMM Match : LIM (HMM E-Value=0)
Length = 401
Score = 68.1 bits (159), Expect = 6e-12
Identities = 26/69 (37%), Positives = 38/69 (55%)
Frame = +3
Query: 255 FYEFEGRKYCEQDFQVLFAPCCAKCGEFVIGRVIKAMNSNWHPACFRCEECNVELADAGF 434
F+E +G+ YCE+D+ FAP CA C ++ + A++ WHP F C EC D GF
Sbjct: 320 FFERDGKPYCERDYHDTFAPRCAYCNGPILDSCVTALDQTWHPEHFVCAECGNPFGDTGF 379
Query: 435 IKHAGRALC 461
+ G+ C
Sbjct: 380 HERDGKPFC 388
Score = 45.6 bits (103), Expect = 4e-05
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +3
Query: 318 CAKCGEFVIGRVIKAMNSNWHPACFRCEECNVELADAGFIKHAGRALC 461
CA C + +IG+V A+ WHP F C C L F + G+ C
Sbjct: 282 CAACNKPIIGQVCTALGKTWHPEHFACVACEAPLGTQNFFERDGKPYC 329
Score = 30.7 bits (66), Expect = 1.2
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +3
Query: 255 FYEFEGRKYCEQDFQVLFAPCC 320
F+E +G+ +C +D+ +FAP C
Sbjct: 379 FHERDGKPFCREDYYAMFAPRC 400
>SB_26948| Best HMM Match : LIM (HMM E-Value=2.3e-39)
Length = 351
Score = 54.8 bits (126), Expect = 6e-08
Identities = 23/72 (31%), Positives = 33/72 (45%)
Frame = +3
Query: 255 FYEFEGRKYCEQDFQVLFAPCCAKCGEFVIGRVIKAMNSNWHPACFRCEECNVELADAGF 434
F + R+ C F FA C KC + + ++ S +H CF C C+ LA + F
Sbjct: 216 FIRRDERRLCNNCFDSKFAKVCVKCNQVIKTSSVQHAGSTYHSECFTCHHCDKPLAGSPF 275
Query: 435 IKHAGRALCHVC 470
K GR +C C
Sbjct: 276 TKQEGRNVCQNC 287
Score = 41.5 bits (93), Expect = 6e-04
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Frame = +3
Query: 255 FYEFEGRKYCEQDFQVLFAPCCAKCGEFVIG--RVIKAMNSNWHPACFRCEECNVELADA 428
F + EGR C+ ++ +A C C + G + + +H CF C +CN LA
Sbjct: 275 FTKQEGRNVCQNCYRERYAKRCGACHNLIEGNTKFVAYDEKYFHRECFTCCKCNKPLAGE 334
Query: 429 GFIKHAGRALCHVCN 473
F G +C C+
Sbjct: 335 KFRIRDGEKICLPCD 349
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = +3
Query: 318 CAKC-GEFVIG-RVIKAMNSNWHPACFRCEECNVELADAGFIKHAGRALCHVC 470
CA C G+F G + + + +H CF C+EC + FI+ R LC+ C
Sbjct: 176 CAACNGDFAPGEKKVGYQSKTFHDKCFICDECKQPIGSKQFIRRDERRLCNNC 228
Score = 36.3 bits (80), Expect = 0.023
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 136 CTRCGDGFEPNEKIVNSNGELWHTNCFVCAQC 231
C C F P EK V + +H CF+C +C
Sbjct: 176 CAACNGDFAPGEKKVGYQSKTFHDKCFICDEC 207
>SB_20996| Best HMM Match : LIM (HMM E-Value=9e-22)
Length = 81
Score = 54.0 bits (124), Expect = 1e-07
Identities = 23/76 (30%), Positives = 36/76 (47%)
Frame = +3
Query: 255 FYEFEGRKYCEQDFQVLFAPCCAKCGEFVIGRVIKAMNSNWHPACFRCEECNVELADAGF 434
F++ +GR YCE + C C + + GR I AM+ +HP F C C +L F
Sbjct: 4 FFDHDGRPYCEMHYHAKRGTLCYSCQKPITGRCITAMHRKFHPEHFVCAFCLKQLNKGTF 63
Query: 435 IKHAGRALCHVCNARI 482
+ + CH C ++
Sbjct: 64 KEQNDKPYCHPCFVKL 79
>SB_38221| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 575
Score = 49.2 bits (112), Expect = 3e-06
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +3
Query: 267 EGRKYCEQDFQVLFAPCCAKCGEFVIGRVIKAMN-SNWHPACFRCEECNVELADAGFIKH 443
+G +YC + + +A C C + ++G + SN+H CF C C LA GF++
Sbjct: 505 DGCRYCMECYGKFYAKQCEICLKAIVGGEYYTLEESNFHKECFMCSRCGRSLASEGFVRE 564
Query: 444 AGRALCHVC 470
LC C
Sbjct: 565 GDELLCGDC 573
Score = 48.8 bits (111), Expect = 4e-06
Identities = 23/70 (32%), Positives = 31/70 (44%)
Frame = +3
Query: 279 YCEQDFQVLFAPCCAKCGEFVIGRVIKAMNSNWHPACFRCEECNVELADAGFIKHAGRAL 458
+C +Q F+ CA CGE ++ + WH ACF C C+ LA A F G
Sbjct: 450 FCPGCYQSKFSKRCASCGEPLLEGGVLYNGETWHKACFSCYFCHRSLASAAFSVRDGCRY 509
Query: 459 CHVCNARIKA 488
C C + A
Sbjct: 510 CMECYGKFYA 519
Score = 37.9 bits (84), Expect = 0.008
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = +3
Query: 318 CAKCGEFVIGRVIKAMNSNWHPACFRCEECNVELADAGFIKHAGRALCHVC 470
C K G AMN NWH F+C+ C+ + FI + +C C
Sbjct: 280 CLKALLIFTGEYTVAMNKNWHLGHFQCQTCDHSITGRQFIVRGDKPVCTDC 330
Score = 36.3 bits (80), Expect = 0.023
Identities = 16/65 (24%), Positives = 24/65 (36%), Gaps = 2/65 (3%)
Frame = +3
Query: 282 CEQDFQVLFAPCCAKCGEFVIGRVIKAMNSN--WHPACFRCEECNVELADAGFIKHAGRA 455
C + + C CG+ + + S WH CFRC C + +GF+
Sbjct: 390 CNNCYVANYQKECFACGQMIDSGASRLEYSGNFWHENCFRCANCGEAIGTSGFVPKDDTF 449
Query: 456 LCHVC 470
C C
Sbjct: 450 FCPGC 454
Score = 35.9 bits (79), Expect = 0.031
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +1
Query: 136 CTRCGDGFEPNEKIVNSNGELWHTNCFVCAQC 231
C CG + + +G WH NCF CA C
Sbjct: 402 CFACGQMIDSGASRLEYSGNFWHENCFRCANC 433
Score = 33.5 bits (73), Expect = 0.16
Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Frame = +1
Query: 85 LPNASLFLATMSLDNMYCTRCGDGFEPN-EKIVNSNGELWHTNCFVCAQCFRMFPDGVSM 261
+P F + + RC EP E V NGE WH CF C C R +
Sbjct: 443 VPKDDTFFCPGCYQSKFSKRCASCGEPLLEGGVLYNGETWHKACFSCYFCHRSLA-SAAF 501
Query: 262 NLRD 273
++RD
Sbjct: 502 SVRD 505
Score = 33.1 bits (72), Expect = 0.22
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = +1
Query: 136 CTRCGDGFEPNEKIVNSNGEL-WHTNCFVCAQCFR-MFPDGVSMNLRDESIVN 288
C C P + ++S+ + WH CF+C C R + DG RD+ + N
Sbjct: 339 CEACHQKIGPESRDISSDDDRHWHDKCFICDICRRPLKSDGKFTFYRDQILCN 391
Score = 31.1 bits (67), Expect = 0.87
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Frame = +3
Query: 282 CEQDFQVLFAPCCAKCGEFVIGRVIKAMNSN----WHPACFRCEECNVEL-ADAGFIKHA 446
C F+ +A C C + IG + ++S+ WH CF C+ C L +D F +
Sbjct: 327 CTDCFKDSYAHECEACHQ-KIGPESRDISSDDDRHWHDKCFICDICRRPLKSDGKFTFYR 385
Query: 447 GRALCHVC 470
+ LC+ C
Sbjct: 386 DQILCNNC 393
>SB_22219| Best HMM Match : LIM (HMM E-Value=8.2e-22)
Length = 163
Score = 49.2 bits (112), Expect = 3e-06
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +3
Query: 267 EGRKYCEQDFQVLFAPCCAKCGEFVIGRVIKAMN-SNWHPACFRCEECNVELADAGFIKH 443
+G +YC + + +A C C + ++G + SN+H CF C C LA GF++
Sbjct: 93 DGCRYCMECYGKFYAKQCEICLKAIVGGEYYTLEESNFHKECFMCSRCGRSLASEGFVRE 152
Query: 444 AGRALCHVC 470
LC C
Sbjct: 153 GDELLCGDC 161
Score = 48.8 bits (111), Expect = 4e-06
Identities = 23/70 (32%), Positives = 31/70 (44%)
Frame = +3
Query: 279 YCEQDFQVLFAPCCAKCGEFVIGRVIKAMNSNWHPACFRCEECNVELADAGFIKHAGRAL 458
+C +Q F+ CA CGE ++ + WH ACF C C+ LA A F G
Sbjct: 38 FCPGCYQSKFSKRCASCGEPLLEGGVLYNGETWHKACFSCYFCHRSLASAAFSVRDGCRY 97
Query: 459 CHVCNARIKA 488
C C + A
Sbjct: 98 CMECYGKFYA 107
Score = 33.5 bits (73), Expect = 0.16
Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Frame = +1
Query: 85 LPNASLFLATMSLDNMYCTRCGDGFEPN-EKIVNSNGELWHTNCFVCAQCFRMFPDGVSM 261
+P F + + RC EP E V NGE WH CF C C R +
Sbjct: 31 VPKDDTFFCPGCYQSKFSKRCASCGEPLLEGGVLYNGETWHKACFSCYFCHRSLA-SAAF 89
Query: 262 NLRD 273
++RD
Sbjct: 90 SVRD 93
Score = 33.1 bits (72), Expect = 0.22
Identities = 11/32 (34%), Positives = 14/32 (43%)
Frame = +3
Query: 375 WHPACFRCEECNVELADAGFIKHAGRALCHVC 470
WH CFRC C + +GF+ C C
Sbjct: 11 WHENCFRCANCGEAIGTSGFVPKDDTFFCPGC 42
Score = 30.3 bits (65), Expect = 1.5
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +1
Query: 187 NGELWHTNCFVCAQC 231
+G WH NCF CA C
Sbjct: 7 SGNFWHENCFRCANC 21
>SB_9083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 180
Score = 49.2 bits (112), Expect = 3e-06
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Frame = +3
Query: 279 YCEQDFQVLFAPCCAKCGEFVIGRVIKAMNSNWHPACFRCEECNVELADAGFIKHAGR-A 455
YC+ D+Q + C C ++ G +I N+H ACF C C + I G
Sbjct: 6 YCKDDYQNQYGKKCDSCQLYLEGEIISIHGKNFHEACFACNSCRQPFPPSDKIIFTGTDY 65
Query: 456 LCHVCNARIKA 488
LC CN KA
Sbjct: 66 LCQTCNNAPKA 76
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/60 (30%), Positives = 31/60 (51%)
Frame = +3
Query: 180 ELQWRIMAYKLFCLCPVLSHVS*WCFYEFEGRKYCEQDFQVLFAPCCAKCGEFVIGRVIK 359
E QW + + C L + + +G+ YCE+D+Q LF CA C ++ G+V++
Sbjct: 106 EKQWHLWCFSC-TKCHCLLSLE---YMGMDGKPYCEKDYQELFGVTCAACNGYITGKVLQ 161
Score = 35.5 bits (78), Expect = 0.041
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +3
Query: 318 CAKCGEFVIG-RVIKAMNSNWHPACFRCEECNVELA 422
CA CGE + G + + A+ WH CF C +C+ L+
Sbjct: 89 CAGCGEAIKGSQALLALEKQWHLWCFSCTKCHCLLS 124
>SB_1883| Best HMM Match : LIM (HMM E-Value=2.20004e-42)
Length = 328
Score = 48.0 bits (109), Expect = 7e-06
Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 3/94 (3%)
Frame = +3
Query: 189 WRIMAYKLFCLCPVLSHVS*WCFYEFEGRKYCEQDFQVLFAPCCAKCGEFVIGR--VIKA 362
W K CLC C Y +G+ YC+ D+ F CA+CG + V +A
Sbjct: 122 WHTKCLKC-CLCSDELGREATC-YTKDGKIYCKADYARQFGTKCARCGRSIHANDWVRRA 179
Query: 363 MNSNWHPACFRCEECNVELADA-GFIKHAGRALC 461
N +H ACF C+ C +L+ F G LC
Sbjct: 180 KNCVYHLACFACDNCKRQLSTGEEFALKDGHVLC 213
Score = 37.5 bits (83), Expect = 0.010
Identities = 14/53 (26%), Positives = 24/53 (45%)
Frame = +1
Query: 136 CTRCGDGFEPNEKIVNSNGELWHTNCFVCAQCFRMFPDGVSMNLRDESIVNRI 294
C RCG N+ + + ++H CF C C R G L+D ++ ++
Sbjct: 163 CARCGRSIHANDWVRRAKNCVYHLACFACDNCKRQLSTGEEFALKDGHVLCKL 215
>SB_26945| Best HMM Match : PET (HMM E-Value=7.4e-34)
Length = 621
Score = 47.2 bits (107), Expect = 1e-05
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = +3
Query: 255 FYEFEGRKYCEQDFQVLFAPCCAKCGEFVIGRVI-KAMNSNWHPACFRCEECNVELADAG 431
FY+ +G YC + + F P CA C E + +A + NWH F C EC+ +L
Sbjct: 354 FYK-DGVIYCGRHYAEQFKPRCAACDELIFSETYTQAEDRNWHQRHFCCLECDRDLGGQL 412
Query: 432 FIKHAGRALCHVC 470
++ G+ C C
Sbjct: 413 YVARGGQPHCLEC 425
Score = 31.5 bits (68), Expect = 0.66
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Frame = +1
Query: 82 SLPNASLFLATMSLDNMYCTRCGDGFEPNEKIVNSN--GE--LWHTNCFVCAQCFRMFPD 249
SL + +A + L M C RC E V ++ GE WH CFVC C + D
Sbjct: 291 SLTESCRKVALVLLITMNCFRCSKPVMTGEVAVFASRAGEDKCWHPGCFVCTVCNNLLVD 350
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = +3
Query: 375 WHPACFRCEECNVELADAGFIKHAGRALC 461
WHP CF C CN L D + G C
Sbjct: 334 WHPGCFVCTVCNNLLVDLIYFYKDGVIYC 362
>SB_30367| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 178
Score = 44.4 bits (100), Expect = 9e-05
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Frame = +3
Query: 267 EGRKYCEQDFQVLFAPCCAKCGEFVIGRV--IKAMNSNWHPACFRCEECNVELADAGFIK 440
+ RK C+ ++ +A C C +++ G V + +H CF C C LA F +
Sbjct: 44 DDRKVCKDCNRIHYAKRCVACRQYIEGTVKFVTRDEGTYHSDCFVCSRCRKPLAGKTFTE 103
Query: 441 HAGRALCHVC 470
H G +C C
Sbjct: 104 HEGSWVCDDC 113
Score = 37.1 bits (82), Expect = 0.013
Identities = 16/52 (30%), Positives = 21/52 (40%)
Frame = +3
Query: 318 CAKCGEFVIGRVIKAMNSNWHPACFRCEECNVELADAGFIKHAGRALCHVCN 473
C C + + V++ N H CF C C LA F R +C CN
Sbjct: 2 CNSCFKTITSSVVRYQNKPHHSECFVCFHCRTPLAGKTFQMRDDRKVCKDCN 53
Score = 31.5 bits (68), Expect = 0.66
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 136 CTRCGDGFEPNEKIVNSNGELWHTNCFVCAQC 231
C C E K V + +H++CFVC++C
Sbjct: 61 CVACRQYIEGTVKFVTRDEGTYHSDCFVCSRC 92
Score = 31.5 bits (68), Expect = 0.66
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +1
Query: 136 CTRCGDGFEPNEKIVNSNGELWHTNCFVC 222
C C E N + V + +L+H CFVC
Sbjct: 122 CNMCHQSLEANVEFVKYDEKLYHNECFVC 150
>SB_2217| Best HMM Match : LIM (HMM E-Value=1.2e-40)
Length = 434
Score = 40.7 bits (91), Expect = 0.001
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +1
Query: 136 CTRCGDGFEPNEKIVNSNGELWHTNCFVCAQCFRMFPDGVSM-NLRDESIVNRISKFYLH 312
C+ C G PN+ + + ++H +CFVC+ C R G + + D S + R ++ H
Sbjct: 64 CSGCDQGISPNDMVRRAKHLVFHVDCFVCSYCKRQITTGDELYYIGDGSFICRDDYYHSH 123
Score = 34.3 bits (75), Expect = 0.094
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Frame = +3
Query: 216 CLCPVLSHVS*WCFYEFEGRKYCEQDFQVLFAPCCAKCGEFVI--GRVIKAMNSNWHPAC 389
C CP+ CF EG+ +C+ DF + C+ C + + V +A + +H C
Sbjct: 35 CKCPLTER----CFSR-EGKLFCKTDFYRRYGTKCSGCDQGISPNDMVRRAKHLVFHVDC 89
Query: 390 FRCEECNVELADAGFIKHAG 449
F C C ++ + + G
Sbjct: 90 FVCSYCKRQITTGDELYYIG 109
>SB_30891| Best HMM Match : LIM (HMM E-Value=4.40008e-43)
Length = 511
Score = 39.9 bits (89), Expect = 0.002
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +1
Query: 136 CTRCGDGFEPNEKIVNSNGELWHTNCFVCAQCFRMFPDGVSMNLR 270
C+ C E ++ + +++H NCF C +C RM G +R
Sbjct: 310 CSSCSQAISSKELVMRARDQVYHVNCFACDRCKRMLATGEYFGMR 354
>SB_26947| Best HMM Match : LIM (HMM E-Value=6.2e-32)
Length = 648
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Frame = +3
Query: 255 FYEFEGRKYCEQDFQVLFAPCCAKCGEFVIG-RVIKAMNSNWHPACFRCEECNVELADAG 431
FY+ + + YC + P CA C E + + +A +S WH F C EC+ L
Sbjct: 123 FYK-DSKVYCGRHHAETLKPRCAACDEIIFAEQCTEAEDSCWHVQHFCCFECDCPLGGMR 181
Query: 432 FIKHAGRALCHVCNARIKAD 491
++ + C C + A+
Sbjct: 182 YVMRDNKPYCCHCFESLYAE 201
Score = 37.1 bits (82), Expect = 0.013
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +1
Query: 118 SLDNMYCTRCGDGFEPNEKIVNSNGELWH-TN-CFVCAQC 231
SL +C CG+ EP+ + NG+ WH TN CF C C
Sbjct: 197 SLYAEFCDSCGEPIEPDASQMAHNGQHWHATNECFSCCTC 236
Score = 36.3 bits (80), Expect = 0.023
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Frame = +3
Query: 267 EGRKYCEQDFQVLFAPCCAKCGEFVIGRVIKAMNS--NWHPA--CFRCEECNVELADAGF 434
+ + YC F+ L+A C CGE + + ++ +WH CF C C L F
Sbjct: 186 DNKPYCCHCFESLYAEFCDSCGEPIEPDASQMAHNGQHWHATNECFSCCTCGKALLGLPF 245
Query: 435 IKHAGRALC 461
+ +G C
Sbjct: 246 LPKSGEIYC 254
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/48 (22%), Positives = 17/48 (35%)
Frame = +3
Query: 318 CAKCGEFVIGRVIKAMNSNWHPACFRCEECNVELADAGFIKHAGRALC 461
C G + ++ WH +CF C C L D + + C
Sbjct: 84 CVTAGSMAVYASRAGQHTCWHASCFICTTCKELLVDLIYFYKDSKVYC 131
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Frame = +1
Query: 136 CTRCGDGFEPNEKIVNSN--GE--LWHTNCFVCAQCFRMFPD 249
C CG+ V ++ G+ WH +CF+C C + D
Sbjct: 78 CKECGECVTAGSMAVYASRAGQHTCWHASCFICTTCKELLVD 119
>SB_20327| Best HMM Match : LIM (HMM E-Value=4.9e-16)
Length = 339
Score = 39.9 bits (89), Expect = 0.002
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = +1
Query: 136 CTRCGDGFEPNEKIVNSNGELWHTNCFVCAQCFRMFPDGVSMNLRDESI 282
C +C F N+ ++ + +++H +CF C C R G LR++ +
Sbjct: 84 CAKCSLNFSKNDFVMRARNKIYHIDCFRCVACSRQLVPGDEFALREDGL 132
Score = 32.7 bits (71), Expect = 0.29
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +3
Query: 300 VLFAPCCAKCG-EFVIGR-VIKAMNSNWHPACFRCEECNVEL 419
VLF CAKC F V++A N +H CFRC C+ +L
Sbjct: 78 VLFGTKCAKCSLNFSKNDFVMRARNKIYHIDCFRCVACSRQL 119
>SB_31712| Best HMM Match : LIM (HMM E-Value=9e-26)
Length = 481
Score = 39.1 bits (87), Expect = 0.003
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +1
Query: 136 CTRCGDGFEPNEKIVNSNGELWHTNCFVCAQCFRMFPDGVSMNLRDESI 282
C+ C NE ++ + G ++H +CFVC C + G L+D +
Sbjct: 7 CSGCKKTIPANELVMRALGNVYHLHCFVCTMCGHILEKGQEFALKDNKL 55
>SB_15482| Best HMM Match : LIM (HMM E-Value=0)
Length = 349
Score = 39.1 bits (87), Expect = 0.003
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +1
Query: 136 CTRCGDGFEPNEKIVNSNGELWHTNCFVCAQCFRMFPDGVSMNLRDESI 282
C+ C NE ++ + G ++H +CFVC C + G L+D +
Sbjct: 105 CSGCKKTIPANELVMRALGNVYHLHCFVCTMCGHILEKGQEFALKDNKL 153
>SB_20426| Best HMM Match : LIM (HMM E-Value=3e-35)
Length = 160
Score = 38.7 bits (86), Expect = 0.004
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 318 CAKCGEFVIGR-VIKAMNSNWHPACFRCEECNVELADAG 431
C C E + + V++A+ S WH C +CE C+ L D G
Sbjct: 17 CRSCNEPISDKYVLQALGSYWHEGCLKCECCDSRLGDIG 55
>SB_2694| Best HMM Match : LIM (HMM E-Value=6.6e-14)
Length = 446
Score = 36.7 bits (81), Expect = 0.018
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +3
Query: 312 PCCAKCGEFVI-GRVIKAMNSNWHPACFRCEECNVELADAGFIKHAGRALCH 464
P C +CG+ V + N +H CF C++C +L H G+ CH
Sbjct: 42 PKCPRCGDNVYHAEEVSMENHKFHKKCFSCKDCRKKLDSTNAASHDGK--CH 91
Score = 31.1 bits (67), Expect = 0.87
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +1
Query: 91 NASLFLATMSLDN-MYCTRCGDGFEPNEKIVNSNGELWHTNCFVCAQ 228
NA L TMS M C RC D + + ++ G+ WH +CF CA+
Sbjct: 281 NADLPTRTMSEGAPMRCGRC-DKMCYHAEGISMAGKRWHKSCFACAE 326
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Frame = +1
Query: 136 CTRCGDGFEPNEKIVNSNGELWHTNCFVCAQCFRMFPD---GVSMNLRDESIVNRISKFY 306
C RC E+++ + G WH +CF C +C + V + R+ + R++ Y
Sbjct: 218 CPRCEKRAYAAEQVLGA-GFNWHKSCFNCYKCHKKLDSTTVAVHKDARNADLHTRVTLIY 276
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +3
Query: 318 CAKCGE--FVIGRVIKAMNSNWHPACFRCEECNVEL 419
C +C + + +V+ A NWH +CF C +C+ +L
Sbjct: 218 CPRCEKRAYAAEQVLGA-GFNWHKSCFNCYKCHKKL 252
>SB_40829| Best HMM Match : LIM (HMM E-Value=1.7e-14)
Length = 82
Score = 33.1 bits (72), Expect = 0.22
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +3
Query: 318 CAKCGEFVIGRVIK-AMNSNWHPACFRCEECNVELA 422
CA CGE I K A+ +H ACFRC C L+
Sbjct: 11 CATCGEPCIKTEYKYAIGKRFHNACFRCVVCEERLS 46
>SB_57744| Best HMM Match : LIM (HMM E-Value=4.3e-15)
Length = 85
Score = 32.3 bits (70), Expect = 0.38
Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Frame = +3
Query: 318 CAKCGEFVIGRVIK-AMNSNWHPACFRCEECNVELADAGFIKHAGRALCHVC 470
C +C + V + A+ WH +C C+ CN L G C C
Sbjct: 10 CPRCSKTVYKAEERLAIGKKWHKSCLTCKCCNKSLDSTNLADKDGEIYCKGC 61
>SB_20358| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1323
Score = 31.5 bits (68), Expect = 0.66
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +3
Query: 318 CAKCGE--FVIGRVIKAMNSNWHPACFRCEECNVEL 419
C CGE +++ R++ A +H ACFRC CN L
Sbjct: 611 CLICGERVYLMERLV-AERRLFHRACFRCSRCNSSL 645
>SB_29553| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 573
Score = 31.5 bits (68), Expect = 0.66
Identities = 21/73 (28%), Positives = 32/73 (43%)
Frame = +1
Query: 118 SLDNMYCTRCGDGFEPNEKIVNSNGELWHTNCFVCAQCFRMFPDGVSMNLRDESIVNRIS 297
S ++ C CG + E++ N ++H CFVCA C V +N + V
Sbjct: 239 SFESNRCDSCGKSVDILERVAVEN-HVFHKACFVCAIC------NVWLNHFNYCFVPDHD 291
Query: 298 KFYLHHAVQSVES 336
KFY Q +E+
Sbjct: 292 KFYCVQHYQDIEN 304
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +3
Query: 318 CAKCGEFV-IGRVIKAMNSNWHPACFRCEECNVEL 419
C CG+ V I + N +H ACF C CNV L
Sbjct: 245 CDSCGKSVDILERVAVENHVFHKACFVCAICNVWL 279
>SB_57743| Best HMM Match : LIM (HMM E-Value=1.7e-08)
Length = 197
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Frame = +3
Query: 318 CAKCGEFV-IGRVIKAMNSNWHPACFRCEECNVEL 419
C +C + V KA +WH C C+ CN L
Sbjct: 5 CPRCEKPVYFAEQAKANGKSWHKPCLTCKHCNKRL 39
>SB_1021| Best HMM Match : Sec2p (HMM E-Value=1.9)
Length = 451
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = -2
Query: 493 PSALIRALHTWH--NARPACLIKPASASSTLHSSHRKQA 383
P+ AL WH N +CL+KP ST + H+ QA
Sbjct: 9 PTTSSGALPLWHPPNVTNSCLVKPELQFSTANDFHQSQA 47
>SB_20707| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 705
Score = 29.1 bits (62), Expect = 3.5
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +3
Query: 375 WHPACFRCEECNVEL 419
WH CF+CE C + L
Sbjct: 213 WHKGCFKCESCGMTL 227
>SB_26268| Best HMM Match : TIMP (HMM E-Value=2e-06)
Length = 273
Score = 29.1 bits (62), Expect = 3.5
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Frame = +3
Query: 282 CEQDFQVLFAPCCAKCGEF-VIGRVIKAMNSNWHPACFRC---EECNVELADAGFIKHAG 449
C D Q + P C C + GR I + + H C E+C+ ++ D+G+ K AG
Sbjct: 196 CRVDCQRWWLPGCRSCDDRDPWGREIVSSCTYGHMYCALSNDWEKCSWKVLDSGYSKCAG 255
Query: 450 RALCHVCNAR 479
A+ V + R
Sbjct: 256 EAVGEVVSKR 265
>SB_59654| Best HMM Match : LIM (HMM E-Value=0.0026)
Length = 56
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Frame = +3
Query: 312 PCCAKCGEFVIGRVIKAM-NSNWHPACFRCEECNVEL 419
P C KC + V +A+ +H CF C CN L
Sbjct: 10 PKCPKCDKTVYSAEGQALLGMTFHKRCFTCTTCNKSL 46
>SB_58546| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 947
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 103 FLATMSLDNMYCTRCGDGFEPNEKIVNS 186
FLATMS + Y TRC +P+ V S
Sbjct: 825 FLATMSAEQAYGTRCSTQLQPDRGGVES 852
>SB_56863| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 4248
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/30 (33%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +3
Query: 339 VIGRVIKAMNSNWH-PACFRCEECNVELAD 425
V+GR+++ + + WH C R E C ++ D
Sbjct: 513 VVGRLVRFLPTTWHNRICMRVEICGCKVCD 542
>SB_14616| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1307
Score = 27.9 bits (59), Expect = 8.1
Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 1/87 (1%)
Frame = -2
Query: 391 KQAGCQLEFIAFITRPITNSPHFAQHGANKTWKSC-SQYFRPSNS*KHHQETCESTGHKQ 215
+ A CQ +A ++ P S + G KT K C ++ R N + C +T
Sbjct: 1199 RAAECQHPEVAPVSHPSRASSRGSARGGAKTTKKCTTRKIRDQNGDTTTKTKCVTTRRVS 1258
Query: 214 NNLYAIILHWSSQFSHLAQIHPHSEYN 134
H ++Q S LA++ H E++
Sbjct: 1259 G-------HGTNQHSSLAKVIQHGEHD 1278
>SB_12353| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 208
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/27 (37%), Positives = 11/27 (40%)
Frame = +3
Query: 315 CCAKCGEFVIGRVIKAMNSNWHPACFR 395
CC C E+ I S WH C R
Sbjct: 81 CCGNCTEYAFSDSITTTVSKWHLVCDR 107
>SB_12523| Best HMM Match : PROCT (HMM E-Value=0)
Length = 165
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -1
Query: 626 WLY-DPAQLPQVATGKVIAHGKLLPDN 549
W++ P +LPQ+A V H K++ DN
Sbjct: 7 WIHTQPNELPQLAPQDVTTHAKIMADN 33
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,201,111
Number of Sequences: 59808
Number of extensions: 520491
Number of successful extensions: 1518
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 1321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1513
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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