Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060539.seq
         (686 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    26   0.39 
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    24   1.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.6  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   6.3  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    21   8.3  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    21   8.3  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    21   8.3  

>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 25.8 bits (54), Expect = 0.39
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
 Frame = -1

Query: 227 WAQTKQFVCHN-----SPLEFTIFSFGSNPSPQRVQYILSR 120
           +A   +FVC N      P+   ++  G NP  QR+  +LSR
Sbjct: 344 YASLLEFVCVNYVGRKRPMHNVVYRPGENPVTQRLPAVLSR 384


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 7/19 (36%), Positives = 15/19 (78%)
 Frame = -2

Query: 502 FCSPSALIRALHTWHNARP 446
           +CS ++L+  ++T+H +RP
Sbjct: 45  YCSRNSLMTHIYTYHKSRP 63


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
 Frame = -1

Query: 677 EVINLHCSISQDDF-SLLWLYDPAQLPQVATGKVIAHGKLLPDNVKVLRQLLHGTYDNVV 501
           E + + C ++     S++W  D   LP     KV  +G L+ +NV+  R     TY  V 
Sbjct: 506 ETLRVTCPVAGYPIESIVWERDTRVLPINRKQKVFPNGTLIIENVE--RMSDQATYTCVA 563

Query: 500 LQPIRFDTRVTYMAQ 456
                +  R T   Q
Sbjct: 564 RNAQGYSARGTLEVQ 578


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 119 DIVAKNNDALGKLKNLVFIR 60
           +IVAKNND L  +  +  I+
Sbjct: 339 EIVAKNNDTLQFISGIKIIK 358


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +2

Query: 317 LCKVWRVCD 343
           LCK+W  CD
Sbjct: 108 LCKLWLTCD 116


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +2

Query: 317 LCKVWRVCD 343
           LCK+W  CD
Sbjct: 108 LCKLWLTCD 116


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +2

Query: 317 LCKVWRVCD 343
           LCK+W  CD
Sbjct: 108 LCKLWLTCD 116


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,557
Number of Sequences: 438
Number of extensions: 4373
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)