Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060538.seq
         (675 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    23   2.3  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        22   4.0  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     21   9.2  

>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = -2

Query: 317 DTSPGRGAPRPCXVRP--HDRTPQLRKERNI*AIQI 216
           D +  RGA R        HD  P L ++R + A+Q+
Sbjct: 286 DAAAARGAARADGAGGPLHDHRPALAQQRRVAAVQV 321


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = -1

Query: 276 QTA*QNTTTPQRAKYLGDPNSQDSVGTAADAAMPPVC 166
           +T  QN +    ++   +PN  DS+   A++A+  +C
Sbjct: 510 ETFTQNLSLMDESEGRQEPNMTDSLTRLANSALDNIC 546


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +1

Query: 124 DRPVPVDGRAR 156
           DRP+P+D +AR
Sbjct: 188 DRPLPLDQKAR 198


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,887
Number of Sequences: 336
Number of extensions: 2949
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17593745
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)