Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060536.seq
         (684 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   4.1  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   4.1  
AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.            22   5.4  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    22   5.4  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   7.1  
AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450 ...    21   7.1  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           21   9.4  

>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +3

Query: 150 TWLRAVRNC 176
           TW+RAVR C
Sbjct: 136 TWIRAVRKC 144


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +3

Query: 150 TWLRAVRNC 176
           TW+RAVR C
Sbjct: 136 TWIRAVRKC 144


>AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.
          Length = 150

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +1

Query: 322 GCIDMKDVNQRPQMAQFL 375
           GC +   +N +P MA+F+
Sbjct: 54  GCNETGFINSQPSMAEFM 71


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +1

Query: 322 GCIDMKDVNQRPQMAQFL 375
           GC +   +N +P MA+F+
Sbjct: 54  GCNETGFINSQPSMAEFM 71


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +2

Query: 584 YIKICSLSAKRAPRWGADVGEY 649
           ++  C L ++R  RW   +G+Y
Sbjct: 679 FLSRCRLLSERLTRWTLILGQY 700


>AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -1

Query: 312 YVQEIAKKHTVA*CIRQVVMVLVSQFAL 229
           +V E +K H     + +  MV++S FA+
Sbjct: 356 FVIEASKPHERTFTVEKDTMVMISMFAI 383


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +1

Query: 313 LHPGCIDMKDVNQRPQMAQFLCLRNI 390
           LHP    M DVN+         +RNI
Sbjct: 258 LHPAETSMNDVNRNDCAKPLTQIRNI 283


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,891
Number of Sequences: 336
Number of extensions: 3584
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17906060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)