Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060536.seq
         (684 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.10c |stg1||SM22/transgelin-like actin modulating protein...    36   0.004
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma...    30   0.27 
SPBC29A10.14 |rec8||meiotic cohesin complex subunit Rec8|Schizos...    26   4.4  
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    26   4.4  
SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1 |Schizosacc...    26   5.8  
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||...    26   5.8  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   5.8  
SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces po...    25   7.7  

>SPAC4F8.10c |stg1||SM22/transgelin-like actin modulating protein
           Stg1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 174

 Score = 36.3 bits (80), Expect = 0.004
 Identities = 24/78 (30%), Positives = 35/78 (44%)
 Frame = +1

Query: 259 DLAYTLRDGVLLCNLLNVLHPGCIDMKDVNQRPQMAQFLCLRNIKVFLRTCHEVFELRET 438
           DL   L+ GV+LC +        I  K+ N       F+ + NI  F+    +V  +   
Sbjct: 26  DLLDQLQSGVILCRICKEALGANIRYKESNM-----PFVQMENISAFINYAQQVVHVPSQ 80

Query: 439 DLFDPSMLFELSNFHRVL 492
           D+F  S LFE  N  +VL
Sbjct: 81  DMFQTSDLFERRNDEQVL 98


>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 614

 Score = 30.3 bits (65), Expect = 0.27
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
 Frame = +1

Query: 256 HDLAYTLRDGVLLCNLLNVLHPGCIDMKDVNQRP----QMAQFLCLRN 387
           HD    LRDG++L    + + P  ++ K VN+ P    +M +F  + N
Sbjct: 405 HDFFNNLRDGLILLQAYDKITPNTVNWKKVNKAPASGDEMMRFKAVEN 452


>SPBC29A10.14 |rec8||meiotic cohesin complex subunit
           Rec8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +2

Query: 212 LLRPDHKANWETSTITTWRIHYATVCFFAIS*TYYIR 322
           LL PD      T T++ WR +Y      A+  T Y+R
Sbjct: 291 LLEPDENIELSTRTLSQWRKNYVE-RMIALEATKYVR 326


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
 Frame = -1

Query: 681 LVVVCEAQ*LEYSPTSAPQRGARFADR-LQI---FIYIP 577
           ++ VCEA  L  SP+   Q+  R A R LQ+   F+Y+P
Sbjct: 399 MLAVCEAMMLYGSPSHKIQQSLRIASRILQLPATFLYLP 437


>SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 677

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 349 QRPQMAQFLCLRNIKVFLRTCHEVF 423
           ++    Q++ LRNI++ L  C E+F
Sbjct: 293 RKSSATQYVILRNIQIILEQCPEMF 317


>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 211

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = -2

Query: 389 MLRRHKNCAI*GL*LTSFMSMHPGCSTFKRLQRSTPSRNVYA 264
           M  R+ NCAI    +T   S+    S  K LQR  P   V A
Sbjct: 83  MYYRNANCAIVVYDITQAASLEKAKSWIKELQRQAPEGIVIA 124


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 5/68 (7%)
 Frame = +3

Query: 222  PTIRQIGKLAPSRLGVYITRRCA-----SLQSLERTTSGMHRHEGRQSETSNGAVLVSSQ 386
            PT   +   AP+R  V  ++  A     S  S + + SG H H   +    + +   S  
Sbjct: 1267 PTSSSMASAAPARTSVSRSKSKAERHETSTSSRKSSKSGEHHHHHNEGHADSSSTRTSLA 1326

Query: 387  HQSLLKDM 410
            HQ   K +
Sbjct: 1327 HQDSRKSL 1334


>SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = +2

Query: 194 WLTRCGLLRPDHKANWETSTITTWRIHYATVCFFAIS*TYYIR-DAST*RTSIRDLKWRS 370
           W+     +R DH  + ++S + T++  Y+    F +  +Y  +   +T   S+     +S
Sbjct: 134 WVVTDPTVREDHTLDPDSSQLPTYKTEYSETTKFPLGKSYRPKASRTTSSQSVASTMTKS 193

Query: 371 SCVFATSKSS 400
           S   +  KSS
Sbjct: 194 STKTSKKKSS 203


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,883,470
Number of Sequences: 5004
Number of extensions: 59347
Number of successful extensions: 147
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)