Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060536.seq
(684 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0414 - 22685981-22686178,22686374-22686465,22686580-226866... 38 0.006
02_05_0540 + 29852109-29852195,29852304-29852477,29852585-298528... 36 0.023
01_05_0108 + 18183250-18183336,18183451-18183962,18184074-181842... 35 0.069
04_04_0179 - 23342764-23342973,23343185-23343340,23343535-233435... 30 2.0
11_06_0689 - 26294961-26294976,26295271-26295414,26295506-262959... 29 3.4
11_06_0046 - 19585032-19585109,19585198-19585278,19585460-195855... 29 4.5
04_03_1033 + 21861826-21863046,21863153-21863380,21863474-218637... 28 6.0
03_05_0788 + 27709563-27709832,27710101-27710887,27710947-277110... 28 6.0
03_02_0712 - 10600147-10600196,10600257-10600378,10600993-106014... 28 6.0
10_08_0523 - 18518158-18518442,18518786-18518899,18518994-185192... 28 7.9
10_06_0060 + 10184165-10185002,10185084-10185167,10185262-10186334 28 7.9
03_01_0520 - 3900387-3900613,3900812-3900853,3902092-3902210,390... 28 7.9
01_06_1446 - 37409074-37409783,37409896-37409986,37410645-374119... 28 7.9
>02_04_0414 -
22685981-22686178,22686374-22686465,22686580-22686676,
22686801-22686916,22687314-22687513,22687588-22687740,
22687960-22688171,22688403-22688519,22688613-22688687,
22688815-22688853,22689518-22689689,22689809-22690056,
22690151-22690324,22690418-22690504
Length = 659
Score = 38.3 bits (85), Expect = 0.006
Identities = 16/33 (48%), Positives = 23/33 (69%)
Frame = +1
Query: 256 HDLAYTLRDGVLLCNLLNVLHPGCIDMKDVNQR 354
+D+ +RDGVLLC L+NV PG ID + +N +
Sbjct: 157 NDIFNLVRDGVLLCKLINVAVPGTIDERAINTK 189
>02_05_0540 +
29852109-29852195,29852304-29852477,29852585-29852841,
29852954-29853125,29853513-29853551,29853647-29853715,
29853795-29853911,29854190-29854401,29854578-29854736,
29854810-29855009,29855100-29855266,29855346-29855442,
29855560-29855651,29855861-29856139
Length = 706
Score = 36.3 bits (80), Expect = 0.023
Identities = 14/27 (51%), Positives = 21/27 (77%)
Frame = +1
Query: 274 LRDGVLLCNLLNVLHPGCIDMKDVNQR 354
+RDGVLLC L+N+ PG ID + +N++
Sbjct: 166 VRDGVLLCKLINLAVPGTIDERAINKK 192
>01_05_0108 +
18183250-18183336,18183451-18183962,18184074-18184245,
18184984-18185022,18185117-18185185,18185281-18185397,
18185842-18186056,18187085-18187240,18187328-18187527,
18187927-18188084,18188321-18188417,18188738-18188829,
18189018-18189191
Length = 695
Score = 34.7 bits (76), Expect = 0.069
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +1
Query: 262 LAYTLRDGVLLCNLLNVLHPGCIDMKDVNQR 354
L + +DGVLLC L+N+ PG ID + +N +
Sbjct: 189 LFHLTKDGVLLCKLINLAVPGTIDERAINTK 219
>04_04_0179 -
23342764-23342973,23343185-23343340,23343535-23343593,
23344150-23344226,23344309-23344587,23344800-23344885,
23344960-23345027,23345721-23345904,23346071-23346204,
23346776-23347039,23347613-23347677,23347833-23348407,
23348501-23348680,23348765-23348928,23349008-23349261,
23349405-23349562,23349808-23349948,23350176-23350282,
23350651-23350737,23350812-23350901,23350974-23351055,
23351370-23351561,23351748-23351816,23351959-23352294,
23352694-23352837,23352963-23353126,23353817-23353883
Length = 1463
Score = 29.9 bits (64), Expect = 2.0
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +1
Query: 259 DLAYTLRDGVLLCNLLNVLHPGCI 330
+ LR+G++LCN+LN ++PG +
Sbjct: 52 EFCVALRNGLVLCNVLNHVNPGAV 75
>11_06_0689 -
26294961-26294976,26295271-26295414,26295506-26295909,
26296112-26296261,26296334-26296497,26296526-26296836,
26296948-26297084,26297276-26297416,26297821-26297867,
26297977-26298072,26298168-26298249,26298332-26298472,
26298607-26298702,26298809-26298877,26298959-26299030,
26299201-26299368,26299577-26299711,26299792-26299958,
26301213-26301369
Length = 898
Score = 29.1 bits (62), Expect = 3.4
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +1
Query: 274 LRDGVLLCNLLNVLHPGCI 330
LR+G++LCN LN + PG +
Sbjct: 88 LRNGIVLCNALNKVQPGSV 106
>11_06_0046 -
19585032-19585109,19585198-19585278,19585460-19585501,
19586058-19586149,19586243-19586312,19587140-19587223,
19587696-19587770,19587878-19587949,19588082-19588331,
19590224-19590291,19590380-19590460,19590642-19590683,
19591240-19591331,19591425-19591494,19592322-19592405,
19592878-19592952,19593060-19593131,19593264-19593305
Length = 489
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -3
Query: 265 PSRDGASFPICLMVGTQQPTSCKPRRAIAPQFLTARSHVLHKL 137
P + G+S CLM P S +P + I AR H+L ++
Sbjct: 267 PQKLGSSRRECLMAAASIPASSQPFKLILGSSSVARKHILTEM 309
>04_03_1033 +
21861826-21863046,21863153-21863380,21863474-21863704,
21863808-21864070,21864189-21864660
Length = 804
Score = 28.3 bits (60), Expect = 6.0
Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Frame = +1
Query: 268 YTLRDGVLLCNLLNVLHPGCIDMKDVNQRPQMAQFLCLRNIKVFLRTCHEVFELRETDLF 447
Y+LR V+LC+ + + HPG + + ++ ++ +K F V E + TD
Sbjct: 93 YSLR--VVLCSYMILAHPGAV-LSGQGEKEKLLMDSAGSFVKEFELLVKTVLEKQSTDAA 149
Query: 448 DPSMLF--ELSNFHRVLCTLAKLASVLKFSLTVLRPSQHIELNLRRDIYKDLQSVGEAC 618
+F +L++F R C A + F + L+ ++ +E +L R K S+ + C
Sbjct: 150 AGQKMFSAQLADFDRAWC-----AYLYCFVVWKLKDAKSLEDDLVRAACKLELSMMQTC 203
>03_05_0788 +
27709563-27709832,27710101-27710887,27710947-27711086,
27712209-27712442,27712782-27712847
Length = 498
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +1
Query: 394 VFLRTCHEVFELRET-DLFDPSMLFELSNFHRVLCTLAKLAS 516
+FL C +RE D+F+ S+ + FH+VL +L KLA+
Sbjct: 207 MFLWMCGAPQSVREAEDIFEHSLGIVHNMFHKVLASLLKLAA 248
>03_02_0712 -
10600147-10600196,10600257-10600378,10600993-10601489,
10601663-10601851,10601936-10602099,10602193-10602446,
10602535-10602691,10602830-10602995,10603121-10603227,
10603305-10603478,10603594-10603689,10603781-10603862,
10603948-10604058,10604253-10604309,10604638-10604709,
10604799-10605041,10605195-10605341,10605381-10605616,
10605745-10605865
Length = 1014
Score = 28.3 bits (60), Expect = 6.0
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1
Query: 274 LRDGVLLCNLLNVLHPGCI 330
LR+G +LC LN +HPG +
Sbjct: 76 LRNGQILCGALNRVHPGAV 94
>10_08_0523 -
18518158-18518442,18518786-18518899,18518994-18519219,
18519364-18519470,18519809-18519964,18520100-18520210
Length = 332
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +1
Query: 283 GVLLCNLLNVLHPGCIDMKDVNQRPQMAQFLCLRNIKV 396
G + C L++ HPG + M VN + ++ ++N KV
Sbjct: 41 GAVACQLMDAAHPGAVPMHKVNFDAK-TEYEMIQNYKV 77
>10_06_0060 + 10184165-10185002,10185084-10185167,10185262-10186334
Length = 664
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/35 (34%), Positives = 14/35 (40%)
Frame = +3
Query: 120 HRCVSSSLCKTWLRAVRNCGAIARLGLQDVGCCVP 224
+ C SSLC+ V CG GCC P
Sbjct: 149 YACEDSSLCRAGCEDVATCGRGGAAAGAKSGCCYP 183
>03_01_0520 -
3900387-3900613,3900812-3900853,3902092-3902210,
3903633-3903712,3903829-3903856,3904151-3904272,
3904714-3904857,3904897-3906327
Length = 730
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -3
Query: 223 GTQQPTSCKPRRAIAPQF 170
GTQ PT PRRA PQ+
Sbjct: 12 GTQNPTGLNPRRAHLPQY 29
>01_06_1446 -
37409074-37409783,37409896-37409986,37410645-37411988,
37412062-37412709,37412801-37412852,37413141-37413214,
37414370-37414419,37414488-37414569,37414779-37414828,
37414907-37414949,37415030-37415110,37415198-37415243,
37415336-37415382,37415467-37415532,37415612-37415678,
37415761-37415858
Length = 1182
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 575 GGIYIKICSLSAKRAPRWGADVGEYSSYCASHT 673
GG+ +K+ + AK AP + E SS C+S T
Sbjct: 576 GGVQMKVGNARAKSAPPRAVSIKEDSSDCSSST 608
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,096,175
Number of Sequences: 37544
Number of extensions: 400536
Number of successful extensions: 1007
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1007
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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