Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060536.seq
         (684 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20280| Best HMM Match : No HMM Matches (HMM E-Value=.)              97   1e-20
SB_16399| Best HMM Match : No HMM Matches (HMM E-Value=.)              44   1e-04
SB_28994| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   0.001
SB_40413| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.006
SB_15403| Best HMM Match : CH (HMM E-Value=0)                          37   0.017
SB_7905| Best HMM Match : CH (HMM E-Value=1.3e-10)                     36   0.023
SB_39070| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.053
SB_10158| Best HMM Match : MMR_HSR1 (HMM E-Value=9.4e-08)              30   1.5  
SB_52740| Best HMM Match : CbiA (HMM E-Value=1.4e-15)                  29   2.7  
SB_26478| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=7.6e-10)          29   3.5  
SB_7838| Best HMM Match : Filamin (HMM E-Value=1.1e-22)                29   3.5  
SB_13327| Best HMM Match : Viral_cys_rich (HMM E-Value=8.3)            29   4.6  
SB_36121| Best HMM Match : CH (HMM E-Value=0.0017)                     28   6.1  
SB_40462| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_40412| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_12182| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_9403| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.1  

>SB_20280| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 263

 Score = 97.1 bits (231), Expect = 1e-20
 Identities = 44/85 (51%), Positives = 63/85 (74%)
 Frame = +1

Query: 259 DLAYTLRDGVLLCNLLNVLHPGCIDMKDVNQRPQMAQFLCLRNIKVFLRTCHEVFELRET 438
           D A +LRDGVLLC + NVLHPG +   DV  +PQM+QF+CL+NI+ FL  C  +F L + 
Sbjct: 50  DFAQSLRDGVLLCQVANVLHPGAV--VDVGMKPQMSQFMCLKNIRNFLTACTRLFNLADG 107

Query: 439 DLFDPSMLFELSNFHRVLCTLAKLA 513
           DLFD + L+++S+F +V+ TL+KL+
Sbjct: 108 DLFDANELYDVSDFGKVVNTLSKLS 132


>SB_16399| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 57

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 17/37 (45%), Positives = 27/37 (72%)
 Frame = +1

Query: 370 FLCLRNIKVFLRTCHEVFELRETDLFDPSMLFELSNF 480
           F+CL+NI+ FL  C  +F L + DLFD + L+++S+F
Sbjct: 1   FMCLKNIRNFLTACTRLFNLADGDLFDANELYDVSDF 37


>SB_28994| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 422

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
 Frame = +1

Query: 259 DLAYTLRDGVLLCNLLNVLHPGCIDMKDVNQR--PQMAQFLCLRNIKVFLRTCHEVFELR 432
           DL  +L DGV+LC+L+N  + G I    +     P++    C++N+  FL  C ++   R
Sbjct: 331 DLPASLADGVVLCHLVNSAYKGTIPSIHIPSAGVPKLTMTKCMKNVDYFLEACKKLGVDR 390

Query: 433 ETDLFDPSMLFELSNFHRVLCTLAKL 510
           E       +L E S   RV  T+  L
Sbjct: 391 ELLCSSADILQEKSP-QRVCATVQAL 415


>SB_40413| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 603

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 28/77 (36%), Positives = 38/77 (49%)
 Frame = +1

Query: 271 TLRDGVLLCNLLNVLHPGCIDMKDVNQRPQMAQFLCLRNIKVFLRTCHEVFELRETDLFD 450
           TL+DG +LC L N L     D+K +NQ  Q   F  + NI  FL        + + DLF 
Sbjct: 461 TLKDGQVLCRLANRLGG---DLK-INQ--QKMPFKQMENIGNFLSFIENNLGVAKNDLFQ 514

Query: 451 PSMLFELSNFHRVLCTL 501
              L+E SN   V+C +
Sbjct: 515 TVDLYEKSNMWNVICCI 531


>SB_15403| Best HMM Match : CH (HMM E-Value=0)
          Length = 1907

 Score = 36.7 bits (81), Expect = 0.017
 Identities = 14/33 (42%), Positives = 23/33 (69%)
 Frame = +1

Query: 259 DLAYTLRDGVLLCNLLNVLHPGCIDMKDVNQRP 357
           DL   ++DG+LLC ++N+  PG ID + +N+ P
Sbjct: 78  DLYEKVKDGILLCKMINLSAPGTIDERVINKPP 110


>SB_7905| Best HMM Match : CH (HMM E-Value=1.3e-10)
          Length = 172

 Score = 36.3 bits (80), Expect = 0.023
 Identities = 29/101 (28%), Positives = 41/101 (40%)
 Frame = +1

Query: 187 RVLAYKMWVAASRP*GKLGN*HHHDLAYTLRDGVLLCNLLNVLHPGCIDMKDVNQRPQMA 366
           R    +MW+         G     D   TL+ GV+LC L N + PG I  K +N      
Sbjct: 66  RAKVVRMWIEGKTS-CNFGGDTADDFQNTLKSGVVLCKLANAIQPGAI--KKINNAKM-- 120

Query: 367 QFLCLRNIKVFLRTCHEVFELRETDLFDPSMLFELSNFHRV 489
            F+ + NI+ F     +   +     F    LFE  N H+V
Sbjct: 121 NFMMMENIENFCNFV-QTKGVASQYQFVTIDLFEGKNMHQV 160


>SB_39070| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 35.1 bits (77), Expect = 0.053
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = +1

Query: 301 LLNVLHPGCIDMKDVNQRPQMAQFLCLRNIKVFLRTCH-EVFELRETDLFDPSMLFELSN 477
           ++N + PG I         +   F  L NI+ FL+ C  E F     DLF P  L+E +N
Sbjct: 203 VMNEVFPGAISKIHGINGGRFHGFQILENIEKFLKACQGEPFNCNVVDLFSPGDLYEKNN 262

Query: 478 FHRV 489
             +V
Sbjct: 263 VGQV 266



 Score = 34.7 bits (76), Expect = 0.071
 Identities = 23/71 (32%), Positives = 30/71 (42%)
 Frame = +1

Query: 265 AYTLRDGVLLCNLLNVLHPGCIDMKDVNQRPQMAQFLCLRNIKVFLRTCHEVFELRETDL 444
           A  LR GV+LC + N +    I     + +     F+   NI  FL  C  V  L   +L
Sbjct: 306 AEPLRSGVILCKIANKIKSNAIPKIGESNK----SFVMQENISKFLDFCERVLGLDRLNL 361

Query: 445 FDPSMLFELSN 477
           F    LFE  N
Sbjct: 362 FQTVDLFERQN 372


>SB_10158| Best HMM Match : MMR_HSR1 (HMM E-Value=9.4e-08)
          Length = 340

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = -1

Query: 267 RQVVMVLVSQFALWSGRSNPHLVSQDAQSRHSSSPPEAMFYTNLTKH 127
           R+++++ ++Q  L  G   PH   + A  R+SS  P   ++  LT H
Sbjct: 259 RRLILMAINQQRLTFGGPQPHPGPEPAAQRYSSGHPLRRYHPYLTHH 305


>SB_52740| Best HMM Match : CbiA (HMM E-Value=1.4e-15)
          Length = 480

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = -1

Query: 651 EYSPTSAPQRGARFADRLQ 595
           +Y PTSA +RG R+A RLQ
Sbjct: 340 DYRPTSAYERGQRYASRLQ 358


>SB_26478| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=7.6e-10)
          Length = 142

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = +2

Query: 161 GGEELWRDCASWLTRCG--LLRPDHKANWETSTITTWRIHYATVCF 292
           G   + +DCA   T+ G  L+ P    ++     TTW   Y  VCF
Sbjct: 94  GSRFIRQDCAVTDTQVGWALMHPGRLTHYHEGLPTTWGTRYIMVCF 139


>SB_7838| Best HMM Match : Filamin (HMM E-Value=1.1e-22)
          Length = 820

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +1

Query: 277 RDGVLLCNLLNVLHPGCIDMKDVNQRPQMAQFLCLRNIKVFLRTCHEVF 423
           RDG+ +C L+N L PG I      ++            K+ ++T H+ F
Sbjct: 454 RDGMAICELVNALQPGLIPDSKYKEKTNSE-----ATAKIGIQTAHDAF 497


>SB_13327| Best HMM Match : Viral_cys_rich (HMM E-Value=8.3)
          Length = 321

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 18/44 (40%), Positives = 28/44 (63%)
 Frame = +1

Query: 529 SLTVLRPSQHIELNLRRDIYKDLQSVGEACAPLGSRRR*VLQLL 660
           S T  RP+  ++LNL +D+Y    ++ EA   LGS+ R VL++L
Sbjct: 149 SSTKRRPTFPVDLNLFQDLYMHF-NLTEANLVLGSKVRNVLRVL 191


>SB_36121| Best HMM Match : CH (HMM E-Value=0.0017)
          Length = 209

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 23/71 (32%), Positives = 34/71 (47%)
 Frame = +1

Query: 259 DLAYTLRDGVLLCNLLNVLHPGCIDMKDVNQRPQMAQFLCLRNIKVFLRTCHEVFELRET 438
           D   +L DGVLLC L  +++   I +  +N+  Q        N+ VF R C E   L + 
Sbjct: 49  DFRESLADGVLLCEL--IVNVANISVGRINK--QGTAHAGRDNLSVFFRAC-EALGLDKY 103

Query: 439 DLFDPSMLFEL 471
            LF+   L E+
Sbjct: 104 QLFEHEDLDEV 114


>SB_40462| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1580

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 680  SSLYAKRSSWSTHRRRLPSGAHASPTDC 597
            + LY KRS +    + LPS  H++P DC
Sbjct: 1292 ADLYVKRS-YDVKAKGLPSKIHSTPNDC 1318


>SB_40412| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 592

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 24/78 (30%), Positives = 37/78 (47%)
 Frame = +1

Query: 259 DLAYTLRDGVLLCNLLNVLHPGCIDMKDVNQRPQMAQFLCLRNIKVFLRTCHEVFELRET 438
           D+   L+DG +LC + N L  G I +       +MA F  + N   FL  C +   + +T
Sbjct: 93  DVHEVLKDGQVLCRVANKL-GGNIKINS----SKMA-FKMMENTGKFLEFC-DTIGVPKT 145

Query: 439 DLFDPSMLFELSNFHRVL 492
           D+F    L+E  N   V+
Sbjct: 146 DMFQTVDLYEKQNMPGVI 163


>SB_12182| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1361

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = -3

Query: 298 CKEAHRRVMYTPSRDGASFPICLMVGTQQPTSCKP-RRAIAPQFLTARSHVLHKLDETHR 122
           C+E    V      D AS  + +   TQ+   CK   R I+P  L  R H+  +LDE  +
Sbjct: 674 CRELFNAVKDCTMYDDAS-ELQVYFITQRDKLCKEGERLISPALLVTRRHLQQELDEERK 732


>SB_9403| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 564

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/38 (39%), Positives = 16/38 (42%)
 Frame = +2

Query: 173 LWRDCASWLTRCGLLRPDHKANWETSTITTWRIHYATV 286
           LW  CASWL  C    P  K       I T  IH A +
Sbjct: 394 LWPKCASWLKTCSRRWPSEKLK---RKIVTQGIHLAAL 428


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,257,377
Number of Sequences: 59808
Number of extensions: 474974
Number of successful extensions: 1109
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1107
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)