Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060536.seq
         (684 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    25   0.51 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   1.6  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   4.7  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 25.4 bits (53), Expect = 0.51
 Identities = 16/49 (32%), Positives = 21/49 (42%)
 Frame = +3

Query: 144 CKTWLRAVRNCGAIARLGLQDVGCCVPTIRQIGKLAPSRLGVYITRRCA 290
           C TW+     C   + L L    C +   R I    P R G ++TRR A
Sbjct: 98  CDTWIAFDVMCSTASILNL----CAISLDRYIHIKDPLRYGRWVTRRIA 142


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +3

Query: 90   GLKTTGSCVYHRCVS 134
            GLKTTG+ VY R ++
Sbjct: 1264 GLKTTGAAVYARVIA 1278


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 259 DLAYTLRDGVLLCNLL 306
           +L+Y L  G+LLC L+
Sbjct: 693 ELSYVLLSGILLCYLV 708


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,774
Number of Sequences: 438
Number of extensions: 3928
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)