Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060536.seq
(684 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g26700.1 68417.m03848 fimbrin-like protein (FIM1) identical t... 38 0.005
At5g48460.1 68418.m05992 fimbrin-like protein, putative strong s... 38 0.006
At2g04750.1 68415.m00485 fimbrin-like protein, putative similar ... 38 0.006
At5g55400.1 68418.m06902 fimbrin-like protein, putative similar ... 38 0.008
At5g35700.1 68418.m04269 fimbrin-like protein, putative similar ... 36 0.033
At5g27000.1 68418.m03221 kinesin motor protein-related non-conse... 33 0.18
At3g10310.1 68416.m01237 kinesin motor protein-related similar t... 32 0.41
At1g63640.2 68414.m07198 kinesin motor protein-related C-termina... 32 0.41
At1g63640.1 68414.m07197 kinesin motor protein-related C-termina... 32 0.41
At1g09170.1 68414.m01024 kinesin motor protein-related similar t... 32 0.41
At5g41310.1 68418.m05020 kinesin motor protein-related 31 0.94
At3g44730.1 68416.m04814 kinesin motor protein-related similar t... 31 0.94
At1g55620.2 68414.m06367 voltage-gated chloride channel family p... 30 1.6
At1g55620.1 68414.m06366 voltage-gated chloride channel family p... 30 1.6
At4g19280.1 68417.m02842 hypothetical protein 29 2.9
At5g61730.1 68418.m07746 ABC transporter family protein contains... 28 5.0
At5g46410.1 68418.m05712 NLI interacting factor (NIF) family pro... 28 5.0
At3g25510.1 68416.m03172 disease resistance protein (TIR-NBS-LRR... 28 5.0
At2g47500.1 68415.m05929 kinesin motor protein-related 28 6.6
At1g18940.1 68414.m02357 nodulin family protein similar to nodul... 28 6.6
>At4g26700.1 68417.m03848 fimbrin-like protein (FIM1) identical to
fimbrin-like protein (ATFIM1) [Arabidopsis thaliana]
GI:2905893
Length = 687
Score = 38.3 bits (85), Expect = 0.005
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = +1
Query: 250 HHHDLAYTLRDGVLLCNLLNVLHPGCIDMKDVNQR 354
H + L ++DGVLLC L+NV PG ID + +N +
Sbjct: 152 HSNQLYELVKDGVLLCKLINVAVPGTIDERAINTK 186
>At5g48460.1 68418.m05992 fimbrin-like protein, putative strong
similarity to fimbrin-like protein AtFim2 [Arabidopsis
thaliana] GI:2737926; contains Pfam profile PF00307:
Calponin homology (CH) domain
Length = 654
Score = 37.9 bits (84), Expect = 0.006
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = +1
Query: 256 HDLAYTLRDGVLLCNLLNVLHPGCIDMKDVNQRPQM 363
+DL +DGVLLC L+NV PG ID + +N + +
Sbjct: 155 NDLFEVAKDGVLLCKLINVAVPGTIDERAINTKSML 190
>At2g04750.1 68415.m00485 fimbrin-like protein, putative similar to
fimbrin-like protein (ATFIM1) [Arabidopsis thaliana]
GI:2905893; contains Pfam profile PF00307: Calponin
homology (CH) domain
Length = 652
Score = 37.9 bits (84), Expect = 0.006
Identities = 15/49 (30%), Positives = 29/49 (59%)
Frame = +1
Query: 274 LRDGVLLCNLLNVLHPGCIDMKDVNQRPQMAQFLCLRNIKVFLRTCHEV 420
++DGVLLC L+N+ PG ID + +N + ++ + N+ + L + +
Sbjct: 153 VKDGVLLCKLINIAVPGTIDERAINTKKELNPWERTENLSLCLNSAKAI 201
>At5g55400.1 68418.m06902 fimbrin-like protein, putative similar to
fimbrin-like protein (ATFIM1) [Arabidopsis thaliana]
GI:2905893; contains Pfam profile PF00307: Calponin
homology (CH) domain
Length = 714
Score = 37.5 bits (83), Expect = 0.008
Identities = 15/33 (45%), Positives = 23/33 (69%)
Frame = +1
Query: 256 HDLAYTLRDGVLLCNLLNVLHPGCIDMKDVNQR 354
+DL ++DGVLLC L+N+ PG ID + +N +
Sbjct: 155 NDLYELVKDGVLLCKLINIAVPGTIDERAINTK 187
>At5g35700.1 68418.m04269 fimbrin-like protein, putative similar to
fimbrin-like protein (ATFIM1) [Arabidopsis thaliana]
GI:2905893, fimbrin [Schizosaccharomyces pombe]
GI:3057144; contains Pfam profile PF00307: Calponin
homology (CH) domain
Length = 687
Score = 35.5 bits (78), Expect = 0.033
Identities = 14/27 (51%), Positives = 20/27 (74%)
Frame = +1
Query: 274 LRDGVLLCNLLNVLHPGCIDMKDVNQR 354
++DGVLLC L+NV PG ID + +N +
Sbjct: 159 VKDGVLLCKLINVAVPGTIDERAINTK 185
>At5g27000.1 68418.m03221 kinesin motor protein-related
non-consensus AT donor splice site at exon 12;
non-consensus AC acceptor splice site at exon 13
Length = 987
Score = 33.1 bits (72), Expect = 0.18
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Frame = +1
Query: 274 LRDGVLLCNLLNVLHPGCIDM-----KDVNQRPQMAQFLCLRNIKVFLRTCHEV 420
LR G++LCN+LN ++PG + DV ++ F NI+ FL E+
Sbjct: 79 LRSGIVLCNVLNKVNPGSVSKVVEAPDDVADGAALSAFQYFENIRNFLVAIEEM 132
>At3g10310.1 68416.m01237 kinesin motor protein-related similar to
carboxy-terminal kinesin 2 GB:P79955 [Xenopus laevis]
Length = 897
Score = 31.9 bits (69), Expect = 0.41
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +1
Query: 274 LRDGVLLCNLLNVLHPGCI 330
LR+G++LCN +N +HPG +
Sbjct: 51 LRNGMILCNAINKIHPGAV 69
>At1g63640.2 68414.m07198 kinesin motor protein-related C-terminal
region is similar to C-term region of kinesin motor
protein GB:AAB51397 (Mus musculus); contains Pfam
profile: PF00225 Kinesin motor domain
Length = 1065
Score = 31.9 bits (69), Expect = 0.41
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +1
Query: 259 DLAYTLRDGVLLCNLLNVLHPGCIDM 336
+L LRDG +LC+LLN L PG + M
Sbjct: 66 ELRACLRDGTVLCSLLNQLSPGSMRM 91
>At1g63640.1 68414.m07197 kinesin motor protein-related C-terminal
region is similar to C-term region of kinesin motor
protein GB:AAB51397 (Mus musculus); contains Pfam
profile: PF00225 Kinesin motor domain
Length = 1064
Score = 31.9 bits (69), Expect = 0.41
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +1
Query: 259 DLAYTLRDGVLLCNLLNVLHPGCIDM 336
+L LRDG +LC+LLN L PG + M
Sbjct: 66 ELRACLRDGTVLCSLLNQLSPGSMRM 91
>At1g09170.1 68414.m01024 kinesin motor protein-related similar to
GB:AAB61066
Length = 1010
Score = 31.9 bits (69), Expect = 0.41
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1
Query: 259 DLAYTLRDGVLLCNLLNVLHPGCI 330
D LR G+LLCN+LN + PG +
Sbjct: 84 DFRIALRSGILLCNVLNRVKPGAV 107
>At5g41310.1 68418.m05020 kinesin motor protein-related
Length = 961
Score = 30.7 bits (66), Expect = 0.94
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = +1
Query: 259 DLAYTLRDGVLLCNLLNVLHPGCIDM 336
+L L DG +LCNLLN L PG + M
Sbjct: 67 ELRACLVDGTVLCNLLNQLSPGSMRM 92
>At3g44730.1 68416.m04814 kinesin motor protein-related similar to 4
other kinesin-like proteins of A. thaliana: F02P16.12
(PID:g2191180), katA (D11371), katB (D21137), and katC
(D21138); contains non-consensus AT-AC splice sites at
intron 10
Length = 1087
Score = 30.7 bits (66), Expect = 0.94
Identities = 10/24 (41%), Positives = 19/24 (79%)
Frame = +1
Query: 259 DLAYTLRDGVLLCNLLNVLHPGCI 330
+ + LR+G++LCN+LN ++PG +
Sbjct: 17 EFSLALRNGLILCNVLNKVNPGSV 40
>At1g55620.2 68414.m06367 voltage-gated chloride channel family
protein contains Pfam profiles PF00654: Voltage gated
chloride channel, PF00571: CBS domain
Length = 781
Score = 29.9 bits (64), Expect = 1.6
Identities = 20/72 (27%), Positives = 33/72 (45%)
Frame = +3
Query: 192 LGLQDVGCCVPTIRQIGKLAPSRLGVYITRRCASLQSLERTTSGMHRHEGRQSETSNGAV 371
+G + VP++ GK + S G R +SL ER T G+ RH +++ V
Sbjct: 538 MGAVGLAIWVPSVANQGKESDSSEGRSTGRGYSSLSPSERKTEGVWRHTD-NADSLELTV 596
Query: 372 LVSSQHQSLLKD 407
+ + H S L +
Sbjct: 597 IENPDHNSFLDE 608
>At1g55620.1 68414.m06366 voltage-gated chloride channel family
protein contains Pfam profiles PF00654: Voltage gated
chloride channel, PF00571: CBS domain
Length = 585
Score = 29.9 bits (64), Expect = 1.6
Identities = 20/72 (27%), Positives = 33/72 (45%)
Frame = +3
Query: 192 LGLQDVGCCVPTIRQIGKLAPSRLGVYITRRCASLQSLERTTSGMHRHEGRQSETSNGAV 371
+G + VP++ GK + S G R +SL ER T G+ RH +++ V
Sbjct: 342 MGAVGLAIWVPSVANQGKESDSSEGRSTGRGYSSLSPSERKTEGVWRHTD-NADSLELTV 400
Query: 372 LVSSQHQSLLKD 407
+ + H S L +
Sbjct: 401 IENPDHNSFLDE 412
>At4g19280.1 68417.m02842 hypothetical protein
Length = 254
Score = 29.1 bits (62), Expect = 2.9
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +1
Query: 373 LCLRNIKVFLRTCHEVFELRETDLFDPSMLFELSNFHRVLCTLAKLASVL 522
+CL F +TC VF+L LF+P S+FH AK+ S++
Sbjct: 46 ICLSTCFYFSKTCFSVFKLLLVCLFNPP---PFSDFHMPEHVAAKIVSLV 92
>At5g61730.1 68418.m07746 ABC transporter family protein contains
Pfam profile: PF00005 ABC transporter
Length = 940
Score = 28.3 bits (60), Expect = 5.0
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 6/49 (12%)
Frame = -3
Query: 487 LDENLTVQTALMDQK-DQFLVVQILHGMS-----LRRL*CCEDTRTAPF 359
L+E + V+ MD + D + VQI HG++ +L CC+ T+T+PF
Sbjct: 489 LEEEILVKQQAMDGRVDPNIAVQI-HGLAKTYPGTTKLGCCKCTKTSPF 536
>At5g46410.1 68418.m05712 NLI interacting factor (NIF) family
protein contains Pfam profile PF03031: NLI interacting
factor
Length = 453
Score = 28.3 bits (60), Expect = 5.0
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Frame = +1
Query: 343 VNQRPQMAQFLC----LRNIKVFLRTCHEVFELRETDLFDPSMLFELSNFHRVLCTLAKL 510
V QRP + +FL L ++ +F + H ++ + D+ DP F F+R C L L
Sbjct: 319 VRQRPHLYRFLERVGELFHVVIFTAS-HSIYASQLLDILDPDGKFISQRFYRDSCIL--L 375
Query: 511 ASVLKFSLTVL 543
+ LTVL
Sbjct: 376 DGIYTKDLTVL 386
>At3g25510.1 68416.m03172 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1981
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = -3
Query: 460 ALMDQKDQFLVVQILHGMSLRRL*CCEDTRTAPFEVSD*RPSCRC 326
AL D QF +++LH ++ RRL C T F V PS C
Sbjct: 610 ALQDLNYQFQEIRLLHWINFRRL-CLPSTFNPEFLVELNMPSSTC 653
>At2g47500.1 68415.m05929 kinesin motor protein-related
Length = 974
Score = 27.9 bits (59), Expect = 6.6
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1
Query: 274 LRDGVLLCNLLNVLHPGCI 330
LR G++LC +LN + PG +
Sbjct: 79 LRSGIILCKVLNKVQPGAV 97
>At1g18940.1 68414.m02357 nodulin family protein similar to
nodulin-like protein [Arabidopsis thaliana] GI:3329368,
nodule-specific protein Nlj70 [Lotus japonicus]
GI:3329366
Length = 526
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/52 (28%), Positives = 29/52 (55%)
Frame = +3
Query: 30 INLCFGSQLTINPRIVMAC*GLKTTGSCVYHRCVSSSLCKTWLRAVRNCGAI 185
+ +C+GSQ ++ P I G+K G+ +Y+ +S +++ +VR G I
Sbjct: 418 VGICYGSQWSLMPTITSELFGVKHMGT-IYNTISIASPMGSYIFSVRLIGYI 468
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,173,710
Number of Sequences: 28952
Number of extensions: 315144
Number of successful extensions: 743
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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